PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0886s0030.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 309aa    MW: 34058.1 Da    PI: 7.1325
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0886s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.46.5e-12175214255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             +y+GVr+++ +g+               r++lg+f ta eAa+a+++a+ kl+g
  SapurV1A.0886s0030.1.p 175 HYRGVRQRP-WGK-------G------SRVWLGTFSTALEAARAYDRAAFKLRG 214
                             7********.9*9.......4......*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.2E-18174223IPR001471AP2/ERF domain
PROSITE profilePS5103216.581175222IPR001471AP2/ERF domain
SuperFamilySSF541716.28E-15175223IPR016177DNA-binding domain
PfamPF008474.1E-7175214IPR001471AP2/ERF domain
SMARTSM003801.0E-25175228IPR001471AP2/ERF domain
CDDcd000182.15E-25175222No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MEADQTQQVS SALELIKHHL LGDLLSPVAT SSSSIYHFST NFETSTSLQR ESTGCSSSDF  60
PAALPDFFGS LFDFTSDLNP AQENNTTIFE FEPKPEIIDL CTPPPLNSTP HVNFLSSSSS  120
GGSSSGKPKP QIQAARRRSL KISLPNKKPE WIQFSNPNQK TVQDNSGVAA QEKRHYRGVR  180
QRPWGKGSRV WLGTFSTALE AARAYDRAAF KLRGSKAILN FPLEAGKCVE ESERKRSRDG  240
GVEEREDVKR VMTVVKREEP ETERDIPLTP SSWTTVWDGG DTKDVFNVPS LSPLSPHPPL  300
GFPQLLVI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-20174223161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0886s0030.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX2209731e-151JX220973.1 Populus x canadensis cultivar Nanling895 ERF5-1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002304300.21e-162ethylene-responsive transcription factor 6
TrEMBLA0A3N7EN161e-160A0A3N7EN16_POPTR; Uncharacterized protein
STRINGPOPTR_0003s07850.11e-161(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.14e-31ERF family protein