PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0869s0210.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 196aa    MW: 22335.2 Da    PI: 5.8818
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0869s0210.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM93.53.5e-2981281127
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk.at 86 
                             lppGfrF P+d+elv ++L++k++  + + + +i+++d+y ++Pw+L+ k+ +  k++yf+s+r +        n++t++gyWk   
  SapurV1A.0869s0210.1.p   8 LPPGFRFCPSDQELVLHFLHRKAALLPSHPHVIIPDLDLYPYDPWQLEGKALSAGKQLYFYSRRTQ--------NKITSNGYWKpMA 86 
                             79*************************888678**************977777889******9854........77999*****534 PP

                     NAM  87 gk.dkevlskkgel...vglkktLvfykgrapkgektdWvmheyr 127
                             g+ +++v++ ++++   vg+k  + fy   + +g kt+Wvm+eyr
  SapurV1A.0869s0210.1.p  87 GRgEEPVVTGDHHVniiVGMKSYFLFY---TADGIKTNWVMEEYR 128
                             44467777753333667**********...78899*********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-363163IPR003441NAC domain
PROSITE profilePS5100535.4048164IPR003441NAC domain
PfamPF023658.2E-209128IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MIMASPNLPP GFRFCPSDQE LVLHFLHRKA ALLPSHPHVI IPDLDLYPYD PWQLEGKALS  60
AGKQLYFYSR RTQNKITSNG YWKPMAGRGE EPVVTGDHHV NIIVGMKSYF LFYTADGIKT  120
NWVMEEYRQS ESCTSSSSTK SSKKTRDRQK QDHSKWVICR VYERDSDEED GGAELSCLDE  180
VFLSLDDLDE ISLPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-27716916170NO APICAL MERISTEM PROTEIN
1ut4_B2e-27716916170NO APICAL MERISTEM PROTEIN
1ut7_A2e-27716916170NO APICAL MERISTEM PROTEIN
1ut7_B2e-27716916170NO APICAL MERISTEM PROTEIN
3swm_A1e-27716919173NAC domain-containing protein 19
3swm_B1e-27716919173NAC domain-containing protein 19
3swm_C1e-27716919173NAC domain-containing protein 19
3swm_D1e-27716919173NAC domain-containing protein 19
3swp_A1e-27716919173NAC domain-containing protein 19
3swp_B1e-27716919173NAC domain-containing protein 19
3swp_C1e-27716919173NAC domain-containing protein 19
3swp_D1e-27716919173NAC domain-containing protein 19
4dul_A2e-27716916170NAC domain-containing protein 19
4dul_B2e-27716916170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0869s0210.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024436961.11e-101NAC domain-containing protein 104
SwissprotQ8GWK62e-68NC104_ARATH; NAC domain-containing protein 104
TrEMBLB9GF871e-100B9GF87_POPTR; Uncharacterized protein
STRINGPOPTR_0001s21440.11e-98(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17363395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.13e-69xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]