PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0851s0010.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family LBD
Protein Properties Length: 231aa    MW: 25002.2 Da    PI: 6.6501
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0851s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26095.65.2e-3041081100
                  DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilk 82 
                             +C++C+vlr++C +dC + p++     p++q++++ +++k++G++ +++l+++ p++ r+++++sl+yeA+ r+ +PvyG+vg++++
  SapurV1A.0851s0010.1.p   4 SCNGCRVLRKGCGDDCSIKPCLqwiknPDSQANATLFLAKFYGRAGLMNLINDGPQHLRPAIFKSLLYEACGRIVNPVYGSVGLLWT 90 
                             6************************************************************************************** PP

                  DUF260  83 lqqqleqlkaelallkee 100
                             +++q +q+++e++l +e+
  SapurV1A.0851s0010.1.p  91 GSWQQCQAAVEAVLKGEP 108
                             ***********9988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.3793109IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-244103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MRASCNGCRV LRKGCGDDCS IKPCLQWIKN PDSQANATLF LAKFYGRAGL MNLINDGPQH  60
LRPAIFKSLL YEACGRIVNP VYGSVGLLWT GSWQQCQAAV EAVLKGEPIT EIESTDQLAL  120
DASDIRHVSK EGDWSASHHL RKVKTKSLFK RSASKPKSSR GEAEHTAFEL MVGCDGLRSV  180
SPDSVLSWRP SSGSDSGETD SLSVETVEAC KPDEPAERSD LGLDLTLGNY *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0851s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002317916.31e-130LOB domain-containing protein 40
SwissprotQ9M8862e-70LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A2K1Y9E01e-129A0A2K1Y9E0_POPTR; Uncharacterized protein
STRINGPOPTR_0012s05340.11e-130(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-72LOB domain-containing protein 41