PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0836s0120.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family TCP
Protein Properties Length: 379aa    MW: 40442.5 Da    PI: 6.516
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0836s0120.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP114.61.3e-3590197495
                     TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssaseceaes 77 
                              k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+p+i++ t                           
  SapurV1A.0836s0120.2.p  90 VKRPSKDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPSIIATTAFydandasdtrramA----------- 165
                             5899*******************************************************99864333322222110........... PP

                     TCP  78 ssssasnsssg........................kaaksaa 95 
                                 ++ +  +                        +   ++ 
  SapurV1A.0836s0120.2.p 166 ----SN-P--HmlgfhhqlypqnlasddnylrktfR---EDL 197
                             ....11.1..01112222233334444555543331...222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.4E-3094211IPR005333Transcription factor, TCP
PROSITE profilePS5136927.66794148IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MELMESQRNN RNQQRNGGAD EDHHSQKEES AAASLQLVAP LESQSSQLQQ HHGSTASPTS  60
QGPFMGSIAS QAGVHPSTST SNSTITKSTV KRPSKDRHTK VDGRGRRIRM PAMCAARVFQ  120
LTRELGHKSD GETIEWLLQQ AEPSIIATTA FYDANDASDT RRAMASNPHM LGFHHQLYPQ  180
NLASDDNYLR KTFREDLFKE TTQQRSTETI EASNSGKSRT GVQDQETAGS FRPATNILPT  240
PMWAVAPATT TNGGNTFWML PVGGGAAPAA TVPEPQMWTF PTAGAAAAGV TSMQRVNFGG  300
GGRVSSPVPL GSMIVQQPVG ANQQLGLGIS ESSMGMIFGG ANAYNSSRVG LGMNLDQNNQ  360
ENQPQGSDSG DENPNDSQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0836s0120.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2156260.0AC215626.1 Populus trichocarpa clone POP014-A12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024439730.10.0transcription factor TCP23
TrEMBLU5FVY30.0U5FVY3_POPTR; Uncharacterized protein
STRINGPOPTR_0013s11510.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72010.18e-58TCP family protein