PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0836s0120.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family TCP
Protein Properties Length: 381aa    MW: 40600.6 Da    PI: 6.516
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0836s0120.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP120.91.5e-3790199495
                     TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.. 88 
                              k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+p+i++ tgt + +a+++++ ++  +++ +  g  
  SapurV1A.0836s0120.1.p  90 VKRPSKDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPSIIATTGTAFYDANDASDTRRAMASNPHMLGfh 176
                             5899**********************************************************7777766633333333331112233 PP

                     TCP  89 ...................kaaksaa 95 
                                                +   ++ 
  SapurV1A.0836s0120.1.p 177 hqlypqnlasddnylrktfR---EDL 199
                             44444555555556553331...222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.66794148IPR017887Transcription factor TCP subgroup
PfamPF036342.6E-3194217IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MELMESQRNN RNQQRNGGAD EDHHSQKEES AAASLQLVAP LESQSSQLQQ HHGSTASPTS  60
QGPFMGSIAS QAGVHPSTST SNSTITKSTV KRPSKDRHTK VDGRGRRIRM PAMCAARVFQ  120
LTRELGHKSD GETIEWLLQQ AEPSIIATTG TAFYDANDAS DTRRAMASNP HMLGFHHQLY  180
PQNLASDDNY LRKTFREDLF KETTQQRSTE TIEASNSGKS RTGVQDQETA GSFRPATNIL  240
PTPMWAVAPA TTTNGGNTFW MLPVGGGAAP AATVPEPQMW TFPTAGAAAA GVTSMQRVNF  300
GGGGRVSSPV PLGSMIVQQP VGANQQLGLG ISESSMGMIF GGANAYNSSR VGLGMNLDQN  360
NQENQPQGSD SGDENPNDSQ *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0836s0120.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2156260.0AC215626.1 Populus trichocarpa clone POP014-A12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024439730.10.0transcription factor TCP23
TrEMBLU5FVY30.0U5FVY3_POPTR; Uncharacterized protein
STRINGPOPTR_0013s11510.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60773050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72010.12e-59TCP family protein