PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0811s0030.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family LBD
Protein Properties Length: 255aa    MW: 28439.4 Da    PI: 6.4986
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0811s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26089.44.6e-2861061100
                  DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqq 86 
                             +C aC+ l ++C+++C++apyfp e++++f  ++++++ ++v kllk+  +++   d+++sl+yeA+ar+++Pv G++g +  lqqq
  SapurV1A.0811s0030.1.p   6 RCGACRNLDKECKNNCIFAPYFPPEKSQEFSLIQQVYSEKEVEKLLKKHgDPTICGDILESLLYEARARLENPVCGSAGYVYCLQQQ 92 
                             6*********************************************99845566********************************* PP

                  DUF260  87 leqlkaelallkee 100
                             + ++k +l  +k+e
  SapurV1A.0811s0030.1.p  93 IVEAKIQLCNAKRE 106
                             ******99988876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.8915107IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-256103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MTKRPRCGAC RNLDKECKNN CIFAPYFPPE KSQEFSLIQQ VYSEKEVEKL LKKHGDPTIC  60
GDILESLLYE ARARLENPVC GSAGYVYCLQ QQIVEAKIQL CNAKRELASY IGEELAGFPT  120
YIPPIRLQNQ LNPPSSFPSP PILKSSPYAA VKWDLPKSDR KEIDIFTAAA TLHHQGIPTT  180
TETLTSSPYA AVNNTDHRSS QIDESPANYC LITAPVTEGF LQAHHRITYF TSQPLISMPE  240
NDWAIIVFIG YNLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-22712512129LOB family transfactor Ramosa2.1
5ly0_B5e-22712512129LOB family transfactor Ramosa2.1
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0811s0030.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011039262.13e-49PREDICTED: LOB domain-containing protein 36-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2063223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.12e-24ASYMMETRIC LEAVES 2-like 1