PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0811s0020.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family LBD
Protein Properties Length: 276aa    MW: 30478.5 Da    PI: 6.9031
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0811s0020.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260135.42.2e-4271061100
                  DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                             +CaaCk+lrrkC+++Cv+apyfp +qp+kfa vhk+FGasnv kll++l+  +reda++sl+yeAe r+rdPvyG+vg+i+ lq++l
  SapurV1A.0811s0020.2.p   7 PCAACKFLRRKCTQECVFAPYFPPDQPQKFASVHKVFGASNVAKLLNELNAAQREDAVNSLAYEAEERLRDPVYGCVGLISILQHRL 93 
                             7************************************************************************************** PP

                  DUF260  88 eqlkaelallkee 100
                             +ql+++l ++k+e
  SapurV1A.0811s0020.2.p  94 KQLQSDLYSAKKE 106
                             *******999887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.6636107IPR004883Lateral organ boundaries, LOB
PfamPF031951.8E-427104IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009954Biological Processproximal/distal pattern formation
GO:0009965Biological Processleaf morphogenesis
GO:0048441Biological Processpetal development
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MSSSNSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQKFASVH KVFGASNVAK LLNELNAAQR  60
EDAVNSLAYE AEERLRDPVY GCVGLISILQ HRLKQLQSDL YSAKKELANY IGPQAMLPMI  120
MQPQHMGNPS SSTGMQHNVM PMMGIPSAGQ MGMRAEAHQN HHVHPQQIYE AHQLAAVVAA  180
REQEMFRAYE QQQQEIVRFN GGLESANSVS ATGYNQINPA AAAMPPSLAL GTFDNTFQIQ  240
QQGEPHPNQL QAQVLLRSQQ QIQQHPKSES EEALI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-4931107114LOB family transfactor Ramosa2.1
5ly0_B1e-4931107114LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtControls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0811s0020.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011039216.11e-173PREDICTED: LOB domain-containing protein 36 isoform X2
SwissprotQ9FKZ35e-89LBD36_ARATH; LOB domain-containing protein 36
TrEMBLA0A2K1ZNX81e-170A0A2K1ZNX8_POPTR; Uncharacterized protein
STRINGPOPTR_0007s11460.11e-168(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.11e-90ASYMMETRIC LEAVES 2-like 1
Publications ? help Back to Top
  1. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]
  2. Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A
    SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 92(6): p. 661-674
    [PMID:27605094]