PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0774s0030.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 564aa    MW: 61496.8 Da    PI: 6.3683
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0774s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.5e-11371413754
                             HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                     HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                             ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  SapurV1A.0774s0030.1.p 371 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 413
                             79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.58364413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-16367434IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-14370419IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-9370413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.37E-12371417No hitNo description
Gene3DG3DSA:4.10.280.109.4E-16371426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048734.29E-6496552No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010440Biological Processstomatal lineage progression
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MLSRLNSTSV WLEDHKEEQD STTNHHHHHN INSTTAAGCG GVMLEGREEM GSLSTFKSML  60
EDEWYVSNNN STIHQTHQDS IKDLTFSPGL GDPDNLLLHQ VDSSSSCSPS SSVFNSLDPS  120
QVHYFMHPKP NLSSILNVVS NNPLEHGFDL SEIGYLENQG TNSAATANVS ALLNRGCGVL  180
GNLGNFSDLS SNSQISIPNL CPDPQFSSSR MLQLPENGPG FTSFRGFDEN SGNQLFLNRS  240
KLLRPLETYP STGAQPTLFQ KRAALRKNLG DNGGNLGLLS GIERDKGKSE MTQISEENDK  300
KRKFSSGDDF LEDVSIDGSG LNYDSDEFTE NTRVEEIGRN GGNSSKANSG VTGGGVDQKG  360
KKKGLPAKNL MAERRRRKKL NDRLYMLRSV VPKISKMDRA SILGDAIEYL KELLQRINDL  420
HNELESTPPS SSMTPTTSFH PLTPTPSALP SPTPSALPSR IMDKLCPSSL PSPNGQPARV  480
EVRVREGRAV NIHMLCGRKP GLLLSTMRAL DNLGLDIQQA VISCFNGFAM DIFRAEQCKE  540
GQDMHPDQIK AVLLDSAGFH GMV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1360378KKKGLPAKNLMAERRRRKK
2372379ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF4059660.0EF405966.1 Populus trichocarpa inducer of CBF expression 1 (ICE1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006374570.10.0hypothetical protein POPTR_0015s11650g
SwissprotQ9LSE21e-142ICE1_ARATH; Transcription factor ICE1
TrEMBLU5FSQ70.0U5FSQ7_POPTR; Uncharacterized protein
STRINGPOPTR_0015s11650.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-110bHLH family protein