PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0747s0010.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ARR-B
Protein Properties Length: 218aa    MW: 25201 Da    PI: 6.402
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0747s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like231.8e-07188208121
                 G2-like   1 kprlrWtpeLHerFveaveqL 21 
                             kpr++W+ eLH++Fv av+ L
  SapurV1A.0747s0010.1.p 188 KPRVVWSVELHRKFVAAVNIL 208
                             79****************987 PP

2Response_reg61.73.7e-213512025109
                             EEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
            Response_reg  25 evaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                              v+++++++ al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a+g+++++ + +  Ga  +l Kp+ +eel +
  SapurV1A.0747s0010.1.p  35 AVTTTSQATTALRMLRENKnkFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGDPKLVMKGITHGACYYLLKPVRIEELKT 120
                             68999**********888778*******************87754.558***********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011028.5361126IPR001789Signal transduction response regulator, receiver domain
SMARTSM004483.3E-1610122IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23009.2E-3226151No hitNo description
SuperFamilySSF521722.7E-2633135IPR011006CheY-like superfamily
PfamPF000725.0E-1835121IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.84E-2136126No hitNo description
Gene3DG3DSA:1.10.10.607.0E-7185210IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MIDCLWYNLT RLFFWHACGI FHMLDLLNKW VVDSAVTTTS QATTALRMLR ENKNKFDLVI  60
SDVHMPDMDG FKLLELVGLE MDLPVIMLSA NGDPKLVMKG ITHGACYYLL KPVRIEELKT  120
IWQHLIRRKK SDNKDRNSLD NRDKPDQGSS EAVPDQKLNK KRKDQNGDED PDEDEDEHEN  180
EDPTTQKKPR VVWSVELHRK FVAAVNILSI DIFRLVK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0747s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN9081440.0FN908144.1 Populus x canadensis mRNA for putative B-type response regulator 22 (rr22 gene), cultivar Dorskamp.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024446133.11e-100two-component response regulator ORR24 isoform X1
SwissprotA2X1N21e-77ORR24_ORYSI; Two-component response regulator ORR24
SwissprotQ6H8052e-77ORR24_ORYSJ; Two-component response regulator ORR24
TrEMBLA0A2K1WUJ91e-98A0A2K1WUJ9_POPTR; Two-component response regulator
STRINGPOPTR_0018s02330.15e-99(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95634112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-59response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]