PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0596s0090.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 136aa    MW: 15236 Da    PI: 5.6736
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0596s0090.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.92.1e-172064149
                     AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaa 49
                            s+y GVr+++ +gr+vAeIr p++   + r++lg+f++aeeAa a++  
  SapurV1A.0596s0090.1.p 20 SKYLGVRRRP-WGRYVAEIRNPYT---KERHWLGTFDSAEEAAIAYDLS 64
                            79********.**********865...5******************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.24E-182081IPR016177DNA-binding domain
PfamPF008475.8E-102063IPR001471AP2/ERF domain
CDDcd000181.62E-262081No hitNo description
PROSITE profilePS5103220.062179IPR001471AP2/ERF domain
SMARTSM003801.8E-272185IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-252179IPR001471AP2/ERF domain
PRINTSPR003671.9E-82233IPR001471AP2/ERF domain
PRINTSPR003671.9E-84460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MENFLPLLCR NPKRSSRQSS KYLGVRRRPW GRYVAEIRNP YTKERHWLGT FDSAEEAAIA  60
YDLSSISFSG FERARTNFHY SFSALPSPPP LAAPPPPPLP PTPEMEEGDQ LGMEDMGTTQ  120
DDESTSTSCS FHPQI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1418701164Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0596s0090.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024446878.16e-66ethylene-responsive transcription factor LEP
SwissprotQ3E7034e-27ERF88_ARATH; Ethylene-responsive transcription factor ERF088
TrEMBLA0A3N7I8W01e-64A0A3N7I8W0_POPTR; Uncharacterized protein
STRINGPOPTR_0019s11780.11e-55(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145131317
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12890.14e-29ERF family protein