PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0578s0120.4.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MIKC_MADS
Protein Properties Length: 217aa    MW: 24852.1 Da    PI: 9.32
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0578s0120.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF100.56.6e-32958150
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                            krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gklye+ 
  SapurV1A.0578s0120.4.p  9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFG 58
                            79**********************************************95 PP

2K-box935e-3179169899
                   K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                             + +e++++s++qe++kLk+++e+Lqr+qRhllGedL++L++keLq+Le+qLe +l   R++K ++l+eq+e+l+kke+ l + n+ L
  SapurV1A.0578s0120.4.p  79 NSSERETQSWYQEATKLKAKYESLQRTQRHLLGEDLGPLNVKELQNLEKQLEGALALARQRK-QVLTEQMEDLRKKERHLGDLNRHL 164
                             368999*****************************************************998.8*********************** PP

                   K-box  95 rkkle 99 
                             + kle
  SapurV1A.0578s0120.4.p 165 KLKLE 169
                             *9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.8E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.655161IPR002100Transcription factor, MADS-box
CDDcd002651.73E-44272No hitNo description
SuperFamilySSF554551.7E-34288IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-33323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.3E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-333859IPR002100Transcription factor, MADS-box
PfamPF014865.3E-2680168IPR002487Transcription factor, K-box
PROSITE profilePS5129714.79285174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009553Biological Processembryo sac development
GO:0009911Biological Processpositive regulation of flower development
GO:0010094Biological Processspecification of carpel identity
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048455Biological Processstamen formation
GO:0048459Biological Processfloral whorl structural organization
GO:0048509Biological Processregulation of meristem development
GO:0048833Biological Processspecification of floral organ number
GO:0080060Biological Processintegument development
GO:0080112Biological Processseed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFGSA  60
SVTKTLERYQ RCCYTPQENS SERETQSWYQ EATKLKAKYE SLQRTQRHLL GEDLGPLNVK  120
ELQNLEKQLE GALALARQRK QVLTEQMEDL RKKERHLGDL NRHLKLKLEA EGQNLQAIQD  180
YWNSGAADGS SNFHLHHSQS SQMDCDPGPV LQIGYS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-22169169MEF2C
5f28_B5e-22169169MEF2C
5f28_C5e-22169169MEF2C
5f28_D5e-22169169MEF2C
6byy_A7e-22169169MEF2 CHIMERA
6byy_B7e-22169169MEF2 CHIMERA
6byy_C7e-22169169MEF2 CHIMERA
6byy_D7e-22169169MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00315DAPTransfer from AT2G45650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0578s0120.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024440764.11e-154MADS-box transcription factor 6 isoform X2
SwissprotQ8LLR11e-127MADS3_VITVI; Agamous-like MADS-box protein MADS3
TrEMBLA0A2K1XRU71e-152A0A2K1XRU7_POPTR; Uncharacterized protein
STRINGXP_002511765.11e-138(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.11e-97AGAMOUS-like 6
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]