PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0566s0080.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family LBD
Protein Properties Length: 164aa    MW: 18154.8 Da    PI: 6.7426
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0566s0080.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260140.26.6e-4461051100
                  DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                             +Ca+Ck+lrr+CakdC++apyfp+++p+kfa+vhk+FGasnv+k+l+++p ++r da+ slvyeA+ar+rdPvyG+vg i+ lq+q+
  SapurV1A.0566s0080.1.p   6 PCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKIFGASNVSKMLQEIPVHQRADAVGSLVYEANARMRDPVYGSVGAISYLQNQV 92 
                             7************************************************************************************** PP

                  DUF260  88 eqlkaelallkee 100
                             +ql+ ela++++e
  SapurV1A.0566s0080.1.p  93 SQLQMELAVAQAE 105
                             *********9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.6915106IPR004883Lateral organ boundaries, LOB
PfamPF031956.5E-436103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MAGSSPCASC KLLRRRCAKD CIFAPYFPSD DPHKFAIVHK IFGASNVSKM LQEIPVHQRA  60
DAVGSLVYEA NARMRDPVYG SVGAISYLQN QVSQLQMELA VAQAEILCIQ MQQEPNLPIQ  120
LDQDEKSLLL ASCNNFTSIP QYFNFASSSN VIQDPLKRES LWT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002298499.11e-114LOB domain protein 12
SwissprotQ8LBW39e-83LBD12_ARATH; LOB domain-containing protein 12
TrEMBLB9GH621e-114B9GH62_POPTR; LOB domain protein 12
STRINGPOPTR_0001s28840.11e-114(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16643497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.15e-84LBD family protein