PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0546s0080.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family TCP
Protein Properties Length: 371aa    MW: 40382.2 Da    PI: 9.6302
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0546s0080.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP882.2e-2754136366
                     TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...................s 66 
                             g+kdrhsk++T +g+RdRR+Rls+++a++++dLq +LG+ ++sk ++WLl + k  i++l+ +                   s
  SapurV1A.0546s0080.1.p  54 GGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQHKLGLSQPSKVVDWLLDATKNDIDKLPPLqiplpgygqfhqpvlfshqS 136
                             78************************************************************955555555444444443331 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.09355113IPR017887Transcription factor TCP subgroup
PfamPF036344.1E-2555117IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MISNPRDKGL RGKQAGGGSS HEAGKISEAT PSISSRQWSA FRNPRIVRVS RTFGGKDRHS  60
KVCTVRGLRD RRIRLSVPTA IQLYDLQHKL GLSQPSKVVD WLLDATKNDI DKLPPLQIPL  120
PGYGQFHQPV LFSHQSNIAS PFFDPNSTFI KDVGFHSLGI KIDTSAADLD GRVQNCSGTG  180
FSRDIEASTR AKDKQAETIT EKGKWIRANE GGGIGSYSAA EQVSAQNFFP LATHSSMPTL  240
LSNTNMPFNS YHWEASNLSL STEFGSHGFQ SQAENSLNSS SSLPLSSGSQ LFFCPPPSMP  300
PLFPSYPPCV NESRDMNHFQ LLSSSSSQHI LPISRAMSSR TKPFSLNLNP GLLHLLNNNE  360
SNPGEDKTGS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-1760114155Putative transcription factor PCF6
5zkt_B3e-1760114155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0546s0080.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2822581e-142GU282258.1 Populus balsamifera isolate RNA13 haplotype A putative TCP family transcription factor gene, partial sequence.
GenBankGU2822591e-142GU282259.1 Populus balsamifera isolate RNA13 haplotype B putative TCP family transcription factor gene, partial sequence.
GenBankGU2822601e-142GU282260.1 Populus balsamifera isolate INU03 haplotype A putative TCP family transcription factor gene, partial sequence.
GenBankGU2822621e-142GU282262.1 Populus balsamifera isolate NWL07 haplotype A putative TCP family transcription factor gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011015070.10.0PREDICTED: transcription factor TCP5-like
RefseqXP_011015071.10.0PREDICTED: transcription factor TCP5-like
TrEMBLA0A2K1XIN30.0A0A2K1XIN3_POPTR; Uncharacterized protein
STRINGPOPTR_0015s06980.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.11e-48TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5