PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0532s0190.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family LBD
Protein Properties Length: 248aa    MW: 25224.8 Da    PI: 8.0702
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0532s0190.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260131.14.8e-41351351100
                  DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                             +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq
  SapurV1A.0532s0190.1.p  35 PCGACKFLRRKCVPGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFSLQQQ 121
                             7***********************9989*********************************************************** PP

                  DUF260  87 leqlkaelallkee 100
                             + +l+ael++l+++
  SapurV1A.0532s0190.1.p 122 VVNLQAELSYLQAH 135
                             *********99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.09334136IPR004883Lateral organ boundaries, LOB
PfamPF031957.0E-4035133IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MSATKTSPIN SGVGGGSSGG GGGGGGGGGG GGGGPCGACK FLRRKCVPGC IFAPYFDSEQ  60
GAAHFAAVHK VFGASNVSKL LLHIPVHKRL DAVVTICYEA QARLRDPVYG CVAHIFSLQQ  120
QVVNLQAELS YLQAHLAALE VPSPPPPPPP TLVTPPPLSI ADLPSASAIP AAYDLSSLFD  180
PMMQPTWSMQ QQQRQMDIRQ FGGSGGSSGT SGGELQALAR ELLHGRGSPP PGFVPCTDAL  240
ASPSISK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002301295.21e-123hypothetical protein POPTR_0002s15000g
SwissprotO813232e-83LBD30_ARATH; LOB domain-containing protein 30
TrEMBLB9GPH41e-123B9GPH4_POPTR; Uncharacterized protein
STRINGVIT_15s0048g00830.t011e-100(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.17e-76LOB domain-containing protein 18