PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0523s0090.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 109aa    MW: 12260.1 Da    PI: 9.3167
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0523s0090.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.31.4e-1314871289
                            HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                      B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrse 89
                            + +rl lp +++e+  ++   ++ l+++de+g++W+++++ + ++++   l + W +Fv+++gL +gD++v+    ++e
  SapurV1A.0523s0090.1.p 14 E-RRLLLPENCLEDLRSD--LEVNLKFKDEEGQVWTFRCRASPGGRSkPALYGDWFSFVREKGLSVGDVIVIIS--DKE 87
                            3.469*******999766..7899***************775555557999********************983..333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.4322104IPR003340B3 DNA binding domain
SMARTSM010190.0033498IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-14489IPR015300DNA-binding pseudobarrel domain
CDDcd100171.45E-144102No hitNo description
SuperFamilySSF1019367.06E-14589IPR015300DNA-binding pseudobarrel domain
PfamPF023623.3E-111587IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MENITKKLNI TDVERRLLLP ENCLEDLRSD LEVNLKFKDE EGQVWTFRCR ASPGGRSKPA  60
LYGDWFSFVR EKGLSVGDVI VIISDKEKNI SAGGCFKIKI KKSTSSKH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0523s0090.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002452.11e-35PREDICTED: double-stranded RNA-binding protein 3-like
TrEMBLA0A2K2AYG52e-54A0A2K2AYG5_POPTR; B3 family protein
STRINGPOPTR_0004s22930.17e-54(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13561527
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.12e-07B3 family protein