PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0523s0040.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 119aa    MW: 13458.5 Da    PI: 6.25
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0523s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.11.8e-14586283
                            EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEE CS
                      B3  2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFk 83
                            f++l+++d  ++g l++p   + +   ++  ++ +++ d++g++W++ ++++++++  ++l+ GW++Fv++ +L++ D v+++
  SapurV1A.0523s0040.1.p  5 FSKLLTADDIENG-LSIPGCSLGQLPDQEGLTMSMQVHDRNGQVWTFSCTIKRYDSVgHFLSVGWNKFVRERDLRVDDKVTIH 86
                            4677899999998.********99999999*******************986666556***********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.33E-11486IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.6E-13488IPR015300DNA-binding pseudobarrel domain
CDDcd100171.96E-10586No hitNo description
PfamPF023623.5E-12586IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MAMVFSKLLT ADDIENGLSI PGCSLGQLPD QEGLTMSMQV HDRNGQVWTF SCTIKRYDSV  60
GHFLSVGWNK FVRERDLRVD DKVTIHEEAM KKQGSGTWIK VEVKRIIRLF GEDIWADV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0523s0040.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002451.14e-54PREDICTED: uncharacterized protein LOC105109425
TrEMBLB9N8A73e-66B9N8A7_POPTR; Uncharacterized protein
TrEMBLU7DUM13e-66U7DUM1_POPTR; Uncharacterized protein
STRINGPOPTR_0004s22990.15e-67(Populus trichocarpa)
STRINGPOPTR_0601s00200.14e-67(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13182519
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.24e-07related to ABI3/VP1 2