PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0523s0010.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 128aa    MW: 14416.4 Da    PI: 6.2584
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0523s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.41.4e-14586283
                            EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                      B3  2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFk 83
                            f++++++d  ++g l++p   + +   ++  ++ +++ d++g+ W++ +++ r+ s +++l+ GW++Fv++ +L++ D v+++
  SapurV1A.0523s0010.1.p  5 FSKFLTADDIENG-LSIPGCSLGQLPDQEGLTMSMQVHDRNGQDWTFSCTIkRNDSVGHFLSVGWNKFVRERDLRVDDKVTIH 86
                            4567799999998.********99999999*******************885666666***********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-13488IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-11486IPR015300DNA-binding pseudobarrel domain
CDDcd100173.42E-10586No hitNo description
PfamPF023621.8E-12689IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MAMVFSKFLT ADDIENGLSI PGCSLGQLPD QEGLTMSMQV HDRNGQDWTF SCTIKRNDSV  60
GHFLSVGWNK FVRERDLRVD DKVTIHEEAM KKEGSGTWIK VEVKRKIRLF GEDIWADVQA  120
IDKVGTK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0523s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002451.19e-57PREDICTED: uncharacterized protein LOC105109425
TrEMBLU7DUM13e-69U7DUM1_POPTR; Uncharacterized protein
STRINGPOPTR_0601s00200.14e-70(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13182519
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.12e-06related to ABI3/VP1 1