PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0521s0060.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 106aa    MW: 11663.9 Da    PI: 5.176
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0521s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.5e-201158253
                     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53
                            +y+GVr +k +g+WvAeIr p++   r r++lg++ taeeAa+a++aa  +l
  SapurV1A.0521s0060.1.p 11 RYRGVRMRK-WGKWVAEIRQPNS---RNRIWLGSYNTAEEAARAYDAAVFCL 58
                            69*****99.**********943...49********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.2E-261173IPR001471AP2/ERF domain
PROSITE profilePS5103220.5741169IPR001471AP2/ERF domain
CDDcd000187.59E-241158No hitNo description
Gene3DG3DSA:3.30.730.108.9E-271162IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-191160IPR016177DNA-binding domain
PfamPF008478.2E-141158IPR001471AP2/ERF domain
PRINTSPR003678.5E-111223IPR001471AP2/ERF domain
PRINTSPR003678.5E-113450IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MARERRDCNG RYRGVRMRKW GKWVAEIRQP NSRNRIWLGS YNTAEEAARA YDAAVFCLQD  60
SESGLFEGPS GMSGEVYLSG GGDGEENLEG IPSGAYYQTS GVFVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-139591263Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0521s0060.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559555e-67EF155955.1 Populus trichocarpa RAP2-like protein (RAP2L14) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011039946.14e-46PREDICTED: ethylene-responsive transcription factor ERF016-like
SwissprotO221744e-22ERF08_ARATH; Ethylene-responsive transcription factor ERF008
TrEMBLA0A3N7F6D83e-41A0A3N7F6D8_POPTR; Uncharacterized protein
TrEMBLA9PLA42e-41A9PLA4_POPTR; RAP2-like protein
STRINGPOPTR_0006s14110.12e-38(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15296813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.11e-17DREB and EAR motif protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]