PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0517s0250.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 557aa    MW: 60908.2 Da    PI: 5.981
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0517s0250.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.4e-11372414754
                             HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                     HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                             ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  SapurV1A.0517s0250.1.p 372 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 414
                             79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.58365414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-16368434IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-9371414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-14371420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-15372427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.23E-12372418No hitNo description
CDDcd048733.37E-6485545No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MLSRLSSNNI WLEDHKEEQG STTNHHHHNN ITSTEAGCGG VMLEGKEEMG SLSTFKSMFE  60
VEDEWYVPNN SSTIHQNHQD SIKDLTFSAS LVDPDNLLLH QVDSSSSCSP SSSVFNNLDP  120
SQVHYFMHPK PTLSSLLNVV SNNPLEHGFD LSEIGFLENQ GTNSATAANV SALLNRGGGV  180
LGNLGDFTDL SSNSQTGIPN LCSDPQFSSS RMLQLPENGP GFNGFRGLDE ISGNQLFFNR  240
SKLLRPLETY PSMGAQPTLF QKRAALRKNL GDNGENSGVA SGIERDKGKS EMIQISEEND  300
KKRKFSSGDD FLEDVSLDGS GLNYDSDEFT ENTRVEETGK NGGNSSKVIS GVTGGGVDQK  360
GKKKGLPAKN LMAERRRRKK LNDRLYMLRS VVPKISKMDR ASILGDAIEY LKELLQRIND  420
LHNELESTPP SSSLTPTTSF HPLTPTPSAL PGRIMDKLCP SSLPSPNGQP ARVEVRVREG  480
RAVNIHMFCG RKPGLLLSTM RALDNLGLDI QQAVISCFNG FAMDIFRAEQ CKEGQEMHPD  540
QIKAFLLDSA GFHGMM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1361379KKKGLPAKNLMAERRRRKK
2373380ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF4059660.0EF405966.1 Populus trichocarpa inducer of CBF expression 1 (ICE1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002318166.10.0Transcription factor ICE1 family protein
SwissprotQ9LSE21e-136ICE1_ARATH; Transcription factor ICE1
TrEMBLB9I3Y80.0B9I3Y8_POPTR; Transcription factor ICE1 family protein
STRINGPOPTR_0012s10780.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-110bHLH family protein