PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0517s0130.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 242aa    MW: 26662.3 Da    PI: 7.3197
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0517s0130.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.77.8e-2054103255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae Aa a+++a+++++g
  SapurV1A.0517s0130.1.p  54 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFETAEAAALAYDEAALRFKG 103
                             7********.**********94....45***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.7E-3353112IPR001471AP2/ERF domain
SMARTSM003803.2E-3854117IPR001471AP2/ERF domain
PfamPF008478.4E-1454103IPR001471AP2/ERF domain
CDDcd000181.01E-2054112No hitNo description
PROSITE profilePS5103224.94854111IPR001471AP2/ERF domain
SuperFamilySSF541716.41E-2254112IPR016177DNA-binding domain
PRINTSPR003671.5E-115566IPR001471AP2/ERF domain
PRINTSPR003671.5E-117793IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MDVMVSALSQ VIGSSHSNPA QVHENPVTST QSSTENDHQT QPVVQDQGNA RRRHYRGVRQ  60
RPWGKWAAEI RDPKKAARVW LGTFETAEAA ALAYDEAALR FKGSKAKLNF PERVQAGATQ  120
LGFFSSGQGS HTMAEPVPDH IMAPLARSRQ PHEVYNPNNF QYPQFLGTTA GYSFSHVMPE  180
APFGGETFLS PTSSSTASSN SWPISSQQQQ QQQEELLRLS NQFGSSYNSR YDPSTFKDEG  240
L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2850117169ATERF1
3gcc_A1e-2850117169ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0517s0130.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002318176.21e-124ethylene-responsive transcription factor ERF113
RefseqXP_011043029.11e-124PREDICTED: ethylene-responsive transcription factor ERF114
SwissprotQ9FH542e-53EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLB9I4111e-122B9I411_POPTR; Uncharacterized protein
STRINGPOPTR_0012s11030.11e-123(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98534115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.15e-45ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]