PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0510s0020.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family TCP
Protein Properties Length: 369aa    MW: 40113 Da    PI: 7.2345
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0510s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP27.11.3e-08321072189
                     TCP  21 RvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg......k 89 
                              + ++a c   ++ L  eLG+ + + +i+WL+  a p    +++ +++++s+   ++++  s++++s++      +
  SapurV1A.0510s0020.1.p  32 HIMIPAMCSTAIYRLRGELGLSSCGAAIQWLIHHARPHLVPAPEPPTKTKSSKtCPSRKTDSVDHDSIPkptcmaR 107
                             5778**************************************9995555533335777777777777774444442 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.60.110.106.0E-50128340IPR003010Carbon-nitrogen hydrolase
SuperFamilySSF563172.09E-47128341IPR003010Carbon-nitrogen hydrolase
PROSITE profilePS5026329.127128368IPR003010Carbon-nitrogen hydrolase
PfamPF007957.2E-39129340IPR003010Carbon-nitrogen hydrolase
PROSITE patternPS009200161176IPR000132Nitrilase/cyanide hydratase, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006807Biological Processnitrogen compound metabolic process
GO:0016810Molecular Functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MEESTKYVEA KQVKKRKHRP LIVAQSPAEK IHIMIPAMCS TAIYRLRGEL GLSSCGAAIQ  60
WLIHHARPHL VPAPEPPTKT KSSKTCPSRK TDSVDHDSIP KPTCMAREDV DAPVSDFPVT  120
SPAARLPVRA TVVQASTVFF DTPTTLAEKA EKLIAGAAAY GSQLVVFPEA FVGGYPRCVR  180
FDATNLTEED DSLQRYYASA IDVPGPEVGR LAKIDGKYKV HLVMGVVERA GFYLYSTMLF  240
FDSQGQHLGQ HCKITLVASE SAVWYSGGKS TLLIYETSIG KIGGLTCWDN KWPLLRTELY  300
DKGVEIFCAP TADPGEIWKT SMTHIALEGG CFVLYANQFS LDAITCAGDL GDIILASTQP  360
GRINSSVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3wuy_A2e-2712833616227Nitrilase
3wuy_B2e-2712833616227Nitrilase
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11016KQVKKRK
Functional Description ? help Back to Top
Source Description
UniProtHighly specific for beta-cyano-L-alanine (Ala(CN)). Low activity with 3-phenylpropionitrile (PPN). Not associated with auxin production but may be involved in cyanide detoxification. {ECO:0000269|PubMed:10574458, ECO:0000269|PubMed:11060302}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0510s0020.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by abscisic acid or by 1-aminocyclopropane-1-carboxylic acid (ACC). {ECO:0000269|PubMed:10574458}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2852808e-38GU285280.1 Populus balsamifera isolate KUU07 haplotype A nitrilase 4 gene, partial sequence.
GenBankGU2852818e-38GU285281.1 Populus balsamifera isolate KUU07 haplotype B nitrilase 4 gene, partial sequence.
GenBankGU2852828e-38GU285282.1 Populus balsamifera isolate MGR10 haplotype A nitrilase 4 gene, partial sequence.
GenBankGU2852838e-38GU285283.1 Populus balsamifera isolate MGR10 haplotype B nitrilase 4 gene, partial sequence.
GenBankGU2852848e-38GU285284.1 Populus balsamifera isolate NWL07 haplotype A nitrilase 4 gene, partial sequence.
GenBankGU2852858e-38GU285285.1 Populus balsamifera isolate NWL07 haplotype B nitrilase 4 gene, partial sequence.
GenBankGU2852868e-38GU285286.1 Populus balsamifera isolate POR11 haplotype A nitrilase 4 gene, partial sequence.
GenBankGU2852878e-38GU285287.1 Populus balsamifera isolate POR11 haplotype B nitrilase 4 gene, partial sequence.
GenBankGU2852888e-38GU285288.1 Populus balsamifera isolate RNA13 haplotype A nitrilase 4 gene, partial sequence.
GenBankGU2852898e-38GU285289.1 Populus balsamifera isolate RNA13 haplotype B nitrilase 4 gene, partial sequence.
GenBankGU2852908e-38GU285290.1 Populus balsamifera isolate STL13 haplotype A nitrilase 4 gene, partial sequence.
GenBankGU2852918e-38GU285291.1 Populus balsamifera isolate STL13 haplotype B nitrilase 4 gene, partial sequence.
GenBankGU2852928e-38GU285292.1 Populus balsamifera isolate STO11 haplotype A nitrilase 4 gene, partial sequence.
GenBankGU2852938e-38GU285293.1 Populus balsamifera isolate STO11 haplotype B nitrilase 4 gene, partial sequence.
GenBankGU2852948e-38GU285294.1 Populus balsamifera isolate WHR03 haplotype A nitrilase 4 gene, partial sequence.
GenBankGU2852958e-38GU285295.1 Populus balsamifera isolate WHR03 haplotype B nitrilase 4 gene, partial sequence.
GenBankGU2852968e-38GU285296.1 Populus balsamifera isolate LOV02 haplotype A nitrilase 4 gene, partial sequence.
GenBankGU2852978e-38GU285297.1 Populus balsamifera isolate LOV02 haplotype B nitrilase 4 gene, partial sequence.
GenBankGU2852988e-38GU285298.1 Populus balsamifera isolate GIL14 haplotype A nitrilase 4 gene, partial sequence.
GenBankGU2852998e-38GU285299.1 Populus balsamifera isolate GIL14 haplotype B nitrilase 4 gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024459261.10.0bifunctional nitrilase/nitrile hydratase NIT4B isoform X1
SwissprotQ429662e-90NRL4B_TOBAC; Bifunctional nitrilase/nitrile hydratase NIT4B
TrEMBLA0A2K2A5G60.0A0A2K2A5G6_POPTR; Uncharacterized protein
STRINGPOPTR_0006s22420.11e-146(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1789636
Publications ? help Back to Top
  1. Dohmoto M,Sano J,Tsunoda H,Yamaguchi K
    Structural analysis of the TNIT4 genes encoding nitrilase-like protein from tobacco.
    DNA Res., 1999. 6(5): p. 313-7
    [PMID:10574458]
  2. Piotrowski M,Schönfelder S,Weiler EW
    The Arabidopsis thaliana isogene NIT4 and its orthologs in tobacco encode beta-cyano-L-alanine hydratase/nitrilase.
    J. Biol. Chem., 2001. 276(4): p. 2616-21
    [PMID:11060302]