PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0484s0050.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 112aa    MW: 12623.7 Da    PI: 9.1204
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0484s0050.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.51.5e-1039963590
                            EEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
                      B3 35 tltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sef 90
                                +d++gr+W +kl+ r ++ +  v+++ W ++v+++gLk+gDf++++++++ +++
  SapurV1A.0484s0050.1.p 39 YFNARDPTGRVWVFKLCTRFGPHKkPVIRGDWLRYVREKGLKVGDFIILTMVEDaENG 96
                            466789**********8855555559************************88775544 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.0E-10894IPR015300DNA-binding pseudobarrel domain
CDDcd100171.93E-11892No hitNo description
SuperFamilySSF1019364.12E-113495IPR015300DNA-binding pseudobarrel domain
PfamPF023621.1E-74095IPR003340B3 DNA binding domain
PROSITE profilePS508638.55743105IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MEIKLVNKQL TTYDIASCLA YPASTLGAFQ MVQGQNAIYF NARDPTGRVW VFKLCTRFGP  60
HKKPVIRGDW LRYVREKGLK VGDFIILTMV EDAENGVSYN IRVEPNLELA L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0484s0050.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011003253.11e-51PREDICTED: uncharacterized protein LOC105110050
TrEMBLB9HE555e-56B9HE55_POPTR; Uncharacterized protein
STRINGPOPTR_0007s02840.18e-57(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14473313