PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0476s0230.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family LBD
Protein Properties Length: 209aa    MW: 22441.4 Da    PI: 7.7069
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0476s0230.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26095.27.3e-302105199
                  DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilk 82 
                             +C++C+vlr++C++ Cvl+  +     p++q +++ +++k+FG+s +++l++a+pe++r+ +++sl++eA+ r+ +Pv+Gavg++++
  SapurV1A.0476s0230.1.p   2 SCNGCRVLRKGCSETCVLRSSLhwiptPEAQGNATLFLAKFFGRSDLMSLISAVPESQRPVLFQSLLFEACGRTVNPVNGAVGLLWS 88 
                             6************************9999********************************************************** PP

                  DUF260  83 lqqqleqlkaelallke 99 
                             ++++++q+++e++l +e
  SapurV1A.0476s0230.1.p  89 GNWNVCQAAVEAVLSGE 105
                             **********9988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.5321107IPR004883Lateral organ boundaries, LOB
PfamPF031958.3E-252101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSETCVLR SSLHWIPTPE AQGNATLFLA KFFGRSDLMS LISAVPESQR  60
PVLFQSLLFE ACGRTVNPVN GAVGLLWSGN WNVCQAAVEA VLSGETLRPL PGILPGVLAP  120
NCDESSDSFS AAAYAVHSMT WNQSKPFDKE NTNQVVSDHH VNLCLARGRG GRDKRGRDAV  180
SFYTGGESET TSFESSGADK KKLLNLFV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0476s0230.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011028812.11e-146PREDICTED: LOB domain-containing protein 39-like
SwissprotQ9SN236e-62LBD38_ARATH; LOB domain-containing protein 38
TrEMBLB9IBU31e-134B9IBU3_POPTR; LBD family protein
STRINGPOPTR_0014s01770.11e-135(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.13e-64LOB domain-containing protein 38