PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0471s0080.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 261aa    MW: 28935.4 Da    PI: 8.2144
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0471s0080.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.6e-19131180255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              y+GVr+++ +g+W+AeIrdp     r +r++lg+f tae Aa+a+++a+  ++g
  SapurV1A.0471s0080.1.p 131 NYRGVRQRP-WGKWAAEIRDP----LRaARVWLGTFTTAEAAARAYDKAAIDFRG 180
                             59*******.**********7....368**********************99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-22131189IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.2E-32131188IPR001471AP2/ERF domain
SMARTSM003802.8E-35131194IPR001471AP2/ERF domain
PfamPF008473.6E-12131180IPR001471AP2/ERF domain
PROSITE profilePS5103224.922131188IPR001471AP2/ERF domain
CDDcd000181.59E-22131188No hitNo description
PRINTSPR003671.7E-11132143IPR001471AP2/ERF domain
PRINTSPR003671.7E-11154170IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MQRPSKRSKT GEAPAATLFS PPEIPPVRLA QDQELALMVA ALRNVVSGTT SSDFSKELNS  60
FNEPITTSYS QFGSTSSNEN SFCNSIWPPS SDLDTCAVCK IKGCLGCNFF PPNHEDKKDD  120
KKGGGKRVKK NYRGVRQRPW GKWAAEIRDP LRAARVWLGT FTTAEAAARA YDKAAIDFRG  180
PRAKLNFPFP EGGISSFEES KEKHGKHVKQ QEKSENRSGF EEGMGKESEL WHKIGDEEMH  240
EWMMMMLDFG NGDSSGSTEK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-22130189161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0471s0080.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006384411.11e-142ethylene-responsive transcription factor ERF109
SwissprotQ9SZ066e-38EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLB9N4Y01e-141B9N4Y0_POPTR; ERF family protein
STRINGPOPTR_0004s14840.11e-142(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29623072
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.15e-35redox responsive transcription factor 1
Publications ? help Back to Top
  1. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  2. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  3. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  4. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  5. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]