PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0470s0110.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family TCP
Protein Properties Length: 567aa    MW: 59807.4 Da    PI: 7.2498
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0470s0110.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP130.51.6e-401552612114
                     TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsss 87 
                             a++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa++ i+++tgt++++a+++  ++s +ss+s++++
  SapurV1A.0470s0110.1.p 155 APAKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAETTIIAATGTGTIPANFStLNVSLRSSGSTHTA 241
                             899******************************************************************999777777777773333 PP

                     TCP  88 gkaaksaakskksqksaasalnlakes 114
                             +       +sk++++s +sal l+++ 
  SapurV1A.0470s0110.1.p 242 P-------PSKSAPHSFHSALGLSHHP 261
                             3.......5555555555555555544 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.0E-36160282IPR005333Transcription factor, TCP
PROSITE profilePS5136926.924161215IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MELSNSQSNK ENNTTQESHH HHHRHHLQQQ LSFDHGRSSS GGGGGGPSHG PFMGSISIQA  60
GLHHHHNLGA SSSTPTTVNT GSVPSPSSSP LSSSSSSTSA STSSTTPPRL VDASLAIATS  120
YDPSLLDSTN KNQQNLSITP AATNSTGAAT AAAPAPAKRS TKDRHTKVDG RGRRIRMPAT  180
CAARVFQLTR ELGHKSDGET IEWLLQQAET TIIAATGTGT IPANFSTLNV SLRSSGSTHT  240
APPSKSAPHS FHSALGLSHH PHYEEGFAHP AFLGFHQQQQ QHLITADQIA QALPIGADVG  300
GSGGESRGGG EENYMRKRFR EDLFKEDNPQ EQGESGGGGG GGEGPPIKAF KSDLQQPKPQ  360
QQETGSSGLL RSSNILPTTA MWAMAPAPPS SGAGNTFWML PMSAGAGGGP PLATATSVSC  420
PSSEPQIWPF ATATPASGNP LQAPLHFVPR FNLPTTNLEF QRGRGSPLQL GSMSPLQLGS  480
MLMQQQQQQH HQQQQPSQHL GLGMPESNLG MLAALNNAYS RGDLNMNSQQ NNPLDHHHHH  540
RHQQQQQQQQ TQGTADSGDE DPNSSQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0470s0110.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011028314.10.0PREDICTED: transcription factor TCP8-like
TrEMBLA0A2K2AYJ20.0A0A2K2AYJ2_POPTR; Uncharacterized protein
STRINGPOPTR_0004s23080.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60773050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.16e-47TCP family protein