PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0428s0090.3.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family LBD
Protein Properties Length: 285aa    MW: 31580.6 Da    PI: 6.0269
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0428s0090.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260136.78.2e-4371061100
                  DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                             +CaaCk+lrrkC+++Cv+apyfp +qp+kfa vhk+FGasnv kll++l+  +reda++sl+yeAe r+rdPvyG+vg+i+ lqq+l
  SapurV1A.0428s0090.3.p   7 PCAACKFLRRKCTQECVFAPYFPPDQPQKFASVHKVFGASNVAKLLNELSAAQREDAVNSLAYEAEERLRDPVYGCVGLISILQQRL 93 
                             7************************************************************************************** PP

                  DUF260  88 eqlkaelallkee 100
                             +ql+++l ++k+e
  SapurV1A.0428s0090.3.p  94 KQLQNDLYSAKKE 106
                             *******999887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.6536107IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-427104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MSSSNSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQKFASVH KVFGASNVAK LLNELSAAQR  60
EDAVNSLAYE AEERLRDPVY GCVGLISILQ QRLKQLQNDL YSAKKELVNY IEGQAMLPML  120
MQPQHLGNSS FSNGMPMMGI PTAGQMGMRA DTHQHHQVNP QQIFEAQQLA AVVAARDQQE  180
MLRAYEQQQH TQAQQEIVRF HGGFEPANSV SAAGFNHMNP AAAMSPSLAL GTFDNTFQIQ  240
PQEEPQPNQL QEELLLQPQS QQPQQIFQHP KSETEEGRSV GPSC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A9e-5131147118LOB family transfactor Ramosa2.1
5ly0_B9e-5131147118LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtControls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0428s0090.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024456992.11e-150LOB domain-containing protein 36
RefseqXP_024456993.11e-150LOB domain-containing protein 36
RefseqXP_024456994.11e-150LOB domain-containing protein 36
RefseqXP_024456995.11e-150LOB domain-containing protein 36
SwissprotQ9FKZ32e-81LBD36_ARATH; LOB domain-containing protein 36
TrEMBLA0A2I4KL021e-150A0A2I4KL02_POPTR; LBD family protein
STRINGPOPTR_0005s14150.11e-149(Populus trichocarpa)
STRINGPOPTR_0007s11460.11e-150(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.12e-80ASYMMETRIC LEAVES 2-like 1
Publications ? help Back to Top
  1. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]
  2. Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A
    SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 92(6): p. 661-674
    [PMID:27605094]