PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0423s0180.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 156aa    MW: 17403.4 Da    PI: 9.8218
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0423s0180.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.56.9e-183584255
                     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             y+G+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  SapurV1A.0423s0180.1.p 35 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPIAAARAYDTAVFYLRG 84
                            69*****99.**********9...336*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.1943592IPR001471AP2/ERF domain
SMARTSM003803.6E-373598IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-213593IPR016177DNA-binding domain
PRINTSPR003676.9E-123647IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-303693IPR001471AP2/ERF domain
CDDcd000185.98E-273694No hitNo description
PfamPF008472.3E-113684IPR001471AP2/ERF domain
PRINTSPR003676.9E-127494IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0042538Biological Processhyperosmotic salinity response
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001078Molecular Functiontranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MEGGCCTSSA NTSSSTTAAG TQKRKHSRQQ NQEKPYRGIR MRKWGKWVAE IREPNKRSRI  60
WLGSYSTPIA AARAYDTAVF YLRGPSARLN FPDLIYQEDE LRDVSAASIR KKATEVGAKV  120
DALQTARHAS PEDSSRVLLP EKPDLNKYPE NSDEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-153492463ATERF1
3gcc_A2e-153492463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00188DAPTransfer from AT1G46768Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0423s0180.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559480.0EF155948.1 Populus trichocarpa RAP2.4-like protein (RAP2L7) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006374902.16e-97ethylene-responsive transcription factor RAP2-1
RefseqXP_024441376.16e-97ethylene-responsive transcription factor RAP2-1
SwissprotQ8LC302e-50RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1
TrEMBLA9PL971e-95A9PL97_POPTR; ERF family protein
STRINGPOPTR_0014s02530.12e-96(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129032106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46768.12e-52related to AP2 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]