PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0400s0170.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 281aa    MW: 29755.5 Da    PI: 4.7083
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0400s0170.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.62.3e-16112161155
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             + ykG+r +  +g+Wv+eIr+p++   ++r++lg++ t+e+Aa+a++ a+++l+g
  SapurV1A.0400s0170.1.p 112 PSYKGIRLR--SGKWVSEIREPRK---TTRVWLGTYPTPEMAAAAYDVAALALKG 161
                             579***976..5*********843...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.53E-15112171No hitNo description
PfamPF008471.4E-10112161IPR001471AP2/ERF domain
SMARTSM003801.4E-27113175IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-17113171IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-25113171IPR001471AP2/ERF domain
PROSITE profilePS5103219.73113169IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MADPNSNVLR ADQSPPPQPS NPSIQIPDPP SSILLQDDQS PHSTSSNPSP RLIPSPGGSL  60
GQPLSVRHDE YYSPRFGFPS QPVSGRQDDQ SPRSTTRSSG GSSTQPTSGR HPSYKGIRLR  120
SGKWVSEIRE PRKTTRVWLG TYPTPEMAAA AYDVAALALK GPDTPLNFPE SIHSYPILAS  180
ASSSDIRAAA SSAASSRSPK PEAGPNPDQL DRPETEGTSS STTAGIQSGQ EFIDEEELLN  240
LPNLLVDMAG GMLVSPPRIN TPSSDDSPGN SDAESLWSYQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-121111771277Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0400s0170.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5887540.0AB588754.1 Populus nigra PncERF1 mRNA for AP2/ERF domain-containing protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002318847.31e-120ethylene-responsive transcription factor ERF025
SwissprotQ9CAN91e-47ERF26_ARATH; Ethylene-responsive transcription factor ERF026
SwissprotQ9FJ908e-48ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A2K1YD421e-118A0A2K1YD42_POPTR; Uncharacterized protein
STRINGPOPTR_0012s13880.11e-119(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4029022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.12e-30ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]