PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0400s0160.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 256aa    MW: 27651.1 Da    PI: 5.4394
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0400s0160.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.71.3e-1785135155
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             + ++GVr++  +g+Wv+e+r+p   +k+ r++lg+f  ae+Aa+a++ a+++l+g
  SapurV1A.0400s0160.1.p  85 PVFRGVRRRN-SGKWVCEVREP---NKKSRIWLGTFPIAEMAARAHDVAALALRG 135
                             579****888.8******9998...347*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.4E-1385135IPR001471AP2/ERF domain
SMARTSM003801.2E-2886149IPR001471AP2/ERF domain
PROSITE profilePS5103221.83886143IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-2086145IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.7E-3186145IPR001471AP2/ERF domain
CDDcd000184.69E-3087145No hitNo description
PRINTSPR003671.2E-78798IPR001471AP2/ERF domain
PRINTSPR003671.2E-7109125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MDCFSHYSDP SPLGARIFWS VLNENNGIGQ EQCSYSPVLS DSSTASTVTT GVQPAPSLSD  60
EEVMLASRNP KKRAGRKKFR ETRHPVFRGV RRRNSGKWVC EVREPNKKSR IWLGTFPIAE  120
MAARAHDVAA LALRGRSACL NFADSAWRLP VPASSEAKDI QKAAAEAAEA FRPEGCVGGE  180
LMRRGDEGKK VAETAAEAEE GVFYMDDEAV FGMPGLLANM AEGMLLPPPH CGGGGDGWGN  240
TEDIDPDMSL WSFSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-13841421271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00557DAPTransfer from AT5G51990Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0400s0160.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ1300680.0KJ130068.1 Populus simonii genotype 05 C-repeat/dehydration-responsive element-binding factor 4 (CBF4) gene, complete cds.
GenBankKJ1300720.0KJ130072.1 Populus simonii genotype 09 C-repeat/dehydration-responsive element-binding factor 4 (CBF4) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002318846.11e-168dehydration-responsive element-binding protein 1A
SwissprotQ9FJ933e-79DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLB9I4F31e-166B9I4F3_POPTR; Uncharacterized protein
STRINGPOPTR_0012s13870.11e-167(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25480.13e-63dehydration response element B1A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]