PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0396s0210.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MIKC_MADS
Protein Properties Length: 169aa    MW: 19828.8 Da    PI: 10.2893
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0396s0210.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.65.7e-27959151
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                            k+ien +nrqvt+skRr gi+K A+EL vLCda+v++i+fs+t+kl+ey+s
  SapurV1A.0396s0210.1.p  9 KKIENPTNRQVTYSKRRDGIFKNAQELTVLCDAKVSLIMFSNTNKLHEYIS 59
                            68***********************************************86 PP

2K-box86.84.4e-2971165195
                   K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 
                             yqk+ g++l++a++e++q++l+kLk+ +++L++e+R+++GedL++Ls+ +L+ Leq++ ++l+ +R +K++++++q+++ +kk ++l
  SapurV1A.0396s0210.1.p  71 YQKALGTDLWSAQYEKMQEQLRKLKDINHMLKKEIRQRIGEDLNELSIDHLRDLEQNMSEALNGVRGRKYHVIKTQTDTCKKKVRNL 157
                             789999********************************************************************************* PP

                   K-box  88 qeenkaLr 95 
                             +++  +Lr
  SapurV1A.0396s0210.1.p 158 EDRYGNLR 165
                             *9998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.202161IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-37160IPR002100Transcription factor, MADS-box
CDDcd002651.91E-37280No hitNo description
SuperFamilySSF554551.83E-36295IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-26323IPR002100Transcription factor, MADS-box
PfamPF003197.7E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-263859IPR002100Transcription factor, MADS-box
PfamPF014863.3E-2082167IPR002487Transcription factor, K-box
PROSITE profilePS5129714.33984168IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MGRGKIEIKK IENPTNRQVT YSKRRDGIFK NAQELTVLCD AKVSLIMFSN TNKLHEYISP  60
STTTKKIYDQ YQKALGTDLW SAQYEKMQEQ LRKLKDINHM LKKEIRQRIG EDLNELSIDH  120
LRDLEQNMSE ALNGVRGRKY HVIKTQTDTC KKKVRNLEDR YGNLRVRI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-16159159MEF2C
5f28_B6e-16159159MEF2C
5f28_C6e-16159159MEF2C
5f28_D6e-16159159MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0396s0210.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3596069e-73AY359606.1 Populus tomentosa sex female APETALA3 (AP3) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011028630.11e-106PREDICTED: floral homeotic protein DEFICIENS-like
SwissprotQ003J29e-88TM6_VITVI; Agamous-like MADS-box protein TM6
TrEMBLA0A2K2AFH71e-104A0A2K2AFH7_POPTR; Uncharacterized protein
STRINGPOPTR_0005s12000.12e-95(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27353375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.13e-61MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]