PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0378s0020.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family WRKY
Protein Properties Length: 350aa    MW: 38819 Da    PI: 10.1879
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0378s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.59.9e-32283340359
                             -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                             D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp+++++tYegeHnh+
  SapurV1A.0378s0020.1.p 283 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEDPSMLVVTYEGEHNHP 340
                             99***********************9988****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.0E-17234279IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.2E-33269341IPR003657WRKY domain
PROSITE profilePS5081130.549276342IPR003657WRKY domain
SuperFamilySSF1182901.44E-27279341IPR003657WRKY domain
SMARTSM007745.0E-39281341IPR003657WRKY domain
PfamPF031062.0E-27283340IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MEGVEEANRA AVESCHRVLS LLSQPQDQVQ YRNLMVETGE AVFRFKKVVS LLNTGLGHAR  60
VRKLKKLPAP LTQSILLDNP LNSTDHSSKT PQFLQSSSYL ESQPIQELGS IAKNCLSLGT  120
PSLELSSNGK NPLQLGQPTP AAHYQFLQLQ QQQLQRLQQQ QQQQMKQQAE MMFRKSNSGI  180
NLNFDSSSCT PTRSSTRSFI SSLSIDGSVA NLEGSAFHLM GAARSSDQSS QQHKRKCSGR  240
GEDGSMKCGS SVRCHCSKKR KHRVKRSIKV PAISSKLADI PPDDYSWRKY GQKPIKGSPH  300
PRGYYKCSSM RGCPARKHVE RCLEDPSMLV VTYEGEHNHP RIPAQSTNT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-202773441076WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0378s0020.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0297790.0CT029779.1 Poplar cDNA sequences.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002306823.10.0probable WRKY transcription factor 21
RefseqXP_024457974.10.0probable WRKY transcription factor 21
SwissprotO043361e-128WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLB9H8I20.0B9H8I2_POPTR; Uncharacterized protein
STRINGPOPTR_0005s24100.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26373479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-112WRKY DNA-binding protein 21