PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0335s0040.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 358aa    MW: 39945.5 Da    PI: 6.4239
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0335s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42e-19175224255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              y+GVr+++ +g+WvAeIr p++   r+r +lg+f+t eeAa a+++a+ kl+g
  SapurV1A.0335s0040.1.p 175 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTGEEAALAYDNAAYKLRG 224
                             59******9.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.57E-32174234No hitNo description
PROSITE profilePS5103222.761175232IPR001471AP2/ERF domain
SMARTSM003803.3E-36175238IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-31175233IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-22175233IPR016177DNA-binding domain
PfamPF008473.2E-14176224IPR001471AP2/ERF domain
PRINTSPR003671.2E-10176187IPR001471AP2/ERF domain
PRINTSPR003671.2E-10198214IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MDLYSSSPLQ SDPVVDELME ALEPFMKSAS FSTIPSPSQI PNYPSSPSQI PNYPSSSSSL  60
PSTSYDYISS FSTQSPLHQH QQPFLYPDVC CSTSTATLFS NGLSINDPMG LQQPSGSIGF  120
DHFTPTQIQQ IQSQIHQNYN HSNPQTYQQP QTLQFLSPKP VPMKQMGVPP KPTKLYRGVR  180
QRHWGKWVAE IRLPKNRTRL WLGTFDTGEE AALAYDNAAY KLRGDFARLN FPHLRHQGSQ  240
IGEYKPLHSS VDAKLQAICK NLENSSQQKQ GGKVEKRRNS AKKETNSVVE TREEERVVVK  300
SETQSPVLTE SDGSGGSSPL SDLTFPDFEE APLDFDSGNF MLQKYPSYEI DWASILS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21174232160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0335s0040.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002307390.30.0LOW QUALITY PROTEIN: ethylene-responsive transcription factor RAP2-13
SwissprotQ8H1E44e-84RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA9PI911e-173A9PI91_POPTR; ERF family protein
STRINGPOPTR_0005s16690.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.15e-70related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]