PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0333s0240.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family TCP
Protein Properties Length: 274aa    MW: 27962.3 Da    PI: 10.3893
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0333s0240.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP123.81.9e-3836126389
                     TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg. 88 
                             +kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as+++ + s+ +++ns+s  
  SapurV1A.0333s0240.1.p  36 VKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTVSVSVRAGGNSNSIs 122
                             79******************************************************************8883333333333222222 PP

                     TCP  89 ...k 89 
                                +
  SapurV1A.0333s0240.1.p 123 slsS 126
                             2220 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-3341128IPR005333Transcription factor, TCP
PROSITE profilePS5136928.2094195IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MSDNSGAVNN GALIDPQRNQ PPGSGGGGAT NGALVVKKPP SKDRHSKVDG RGRRIRMPII  60
CAARVFQLTR ELGHKSDGQT IEWLLRQAEP SIIAATGTGT TPASFSTVSV SVRAGGNSNS  120
ISSLSSNNVH SAASLDHKPL LGPAPFILGK RMRPEEDGNG GKDDGGVIVG PTIGSLMGPT  180
STAAAGSGGF WALQSRPDFW GFAAAPPEMV VQPTAVQQSS LFMHQQHAAA AAAAAMGEAS  240
AARLGNYLPG HLNLLASLSG GTGSSGRREE DQR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00524DAPTransfer from AT5G23280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0333s0240.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011022018.11e-155PREDICTED: transcription factor TCP7-like
SwissprotQ9FMX27e-93TCP7_ARATH; Transcription factor TCP7
TrEMBLB9H5Q11e-142B9H5Q1_POPTR; TCP family protein
STRINGPOPTR_0005s09250.21e-143(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54693153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.15e-57TCP family protein