PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0322s0110.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 394aa    MW: 43492 Da    PI: 4.5604
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0322s0110.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.4e-194594255
                     AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                            ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  SapurV1A.0322s0110.1.p 45 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 94
                            789******.7*********33....35**********************99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.24E-3244101No hitNo description
SuperFamilySSF541712.42E-1945103IPR016177DNA-binding domain
PROSITE profilePS5103219.55945102IPR001471AP2/ERF domain
SMARTSM003802.9E-3645108IPR001471AP2/ERF domain
PfamPF008479.6E-144594IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-2745101IPR001471AP2/ERF domain
PRINTSPR003675.6E-84657IPR001471AP2/ERF domain
PRINTSPR003675.6E-86884IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MARKRKVSGS AEDKSSGEGT MAWDEMVMEA DAAAALGGAR RARKRFVGVR QRPSGRWVAE  60
IKDTIQKIRV WLGTFDTAEE AARAYDEAAC LLRGANTRTN FWPSSPTSSA TPALPSKITN  120
LLLQRITARN KSCDPSATAQ PHNQQQKLVE EYRESACYFS DTQFTGFLDH TDDHSMRNDN  180
TNSTISSSFD CTTTSIVPCL TDKEDSSGKE WDFDYSWSDV AESSSGDGNN LGGEGEGEEE  240
GNDIGALNFH FVDDVGSPFY YSPFEIAEEP VEPECYGDEP AMLKAAMKRM KYERKFSASL  300
YAFNGIPECL NLKLGSGNPK GNGRSDQLAK LRNACNSKKD ESRAEEERLE VMQKQDDYSQ  360
SSMEMKSSSA SMINDGELSL WNTLDLPPIC FIN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0322s0110.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559580.0EF155958.1 Populus trichocarpa WIN1-like protein (WIN1L) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002323878.30.0uncharacterized protein LOC7495994
TrEMBLA0A2K1X5920.0A0A2K1X592_POPTR; Uncharacterized protein
TrEMBLA9PLA70.0A9PLA7_POPTR; WIN1-like protein
STRINGPOPTR_0017s12370.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33383267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.14e-21related to AP2 11