PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0315s0090.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family LBD
Protein Properties Length: 298aa    MW: 31816.1 Da    PI: 7.3751
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0315s0090.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26095.74.9e-304105197
                  DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilk 82 
                             +C++C+vlr++C+++C ++p++     +++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg++++
  SapurV1A.0315s0090.1.p   4 SCNGCRVLRKGCSENCSIRPCLqwiksAESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLMWS 90 
                             6*********************9999777889******************************************************* PP

                  DUF260  83 lqqqleqlkaelall 97 
                             +++ l+q+++e++l 
  SapurV1A.0315s0090.1.p  91 GSWPLCQAAVEAVLK 105
                             *********999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381558.7E-951296IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089116.6153109IPR004883Lateral organ boundaries, LOB
PfamPF031958.7E-244102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSENCS IRPCLQWIKS AESQANATVF LAKFYGRAGL MNLINAGPEH  60
LRPAIFRSLL YEACGRIVNP IYGSVGLMWS GSWPLCQAAV EAVLKGVPIT PINSEIAANA  120
QGPPLKAYDI RHVSKDENSA ASNDANRVRS RCRVGRVVKP KASKPACGDN GLESIVVDMS  180
ATRDGLTRST SHDSSVSHQS GLAMVDGESK ETDESVVSVE TAEESLLFRA EPESKSDLAT  240
HDASSSEIAG LGLNLTLGLE PVSRAHHVVP VKKRRIEACG SSDIDTCKME LGLDYSA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0315s0090.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011035061.10.0PREDICTED: LOB domain-containing protein 41
SwissprotQ9M8861e-105LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A2K2ASG40.0A0A2K2ASG4_POPTR; Uncharacterized protein
STRINGcassava4.1_012667m1e-168(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.12e-85LOB domain-containing protein 41