PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0313s0010.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family AP2
Protein Properties Length: 541aa    MW: 58908.5 Da    PI: 7.5378
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0313s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2461.3e-14169228155
                     AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+a++ a++k++g
  SapurV1A.0313s0010.1.p 169 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEDKAARAYDLAALKYWG 228
                             57*******************666664477446**********99*************98 PP

2AP247.15.7e-15271322155
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  SapurV1A.0313s0010.1.p 271 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 322
                             57****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.44E-22169238No hitNo description
PfamPF008479.6E-12169228IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-17169238IPR016177DNA-binding domain
SMARTSM003803.8E-29170242IPR001471AP2/ERF domain
PROSITE profilePS5103218.927170236IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-15170237IPR001471AP2/ERF domain
PRINTSPR003672.3E-6171182IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-18271332IPR016177DNA-binding domain
PfamPF008477.1E-10271322IPR001471AP2/ERF domain
CDDcd000186.36E-25271332No hitNo description
SMARTSM003801.5E-33272336IPR001471AP2/ERF domain
PROSITE profilePS5103219.045272330IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-18272331IPR001471AP2/ERF domain
PRINTSPR003672.3E-6312332IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MDSTSHQNWL GFSLSNHHHM NNISIPSSSD SSHLCLYEAF STTPTTTTSA QEDNAVAAGR  60
PADISLFTTS GPKLEDFLGG CTTTQPPQQP LGGLFSTETP GTTTPATVSD NSSSEIYDSE  120
LKTIAASLFR GYSSTDHQQT GSSQKHQQLL LQPEHAPKKT ADTFGQRTSI YRGVTRHRWT  180
GRYEAHLWDN SCRREGQSRK GRQVYLGGYD KEDKAARAYD LAALKYWGPT TTTNFPVSNY  240
EKELEGMKHM TRQEFVASLR RKSSGFSRGA SIYRGVTRHH QHGRWQARIG RVAGNKDLYL  300
GTFSTQEEAA EAYDIAAIKF RGLNAVTNFD MSRYDVKSIA NSNLPIGGIS GKSKNSSESV  360
SDSKSIDLSR SDDRDLSSAS SVTFASQPTT STLSFSMPIK QDPSDYWTNI LGYQNTTMNN  420
TKNSSSIVAP STLLQSSTGF PAFQGPTAFS MDFNTHSSVN ESNHSGILFN GGYIEQQNGG  480
DGISTSSSSS SIPFATPIAL HSNGSRYEGN SSYGTWISQS LFQSAKPNLS AYQTPIFGME  540
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002325046.20.0hypothetical protein POPTR_0018s09900g
SwissprotQ6PQQ31e-167AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLB9ILY00.0B9ILY0_POPTR; Uncharacterized protein
STRINGPOPTR_0018s09900.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125622735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-149AINTEGUMENTA-like 5