PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0304s0080.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family TCP
Protein Properties Length: 465aa    MW: 52527.6 Da    PI: 9.7614
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0304s0080.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP152.92e-471012572134
                     TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................ssssas 71 
                             +gkkdrhski T++g+RdRR+Rls+++a++fFdLqd+LGfdk+sktieWL++++k+aikelt+t                 ss+   
  SapurV1A.0304s0080.1.p 101 TGKKDRHSKINTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFTKSKAAIKELTDTvpkvrkwsrtsaggksvSST--- 184
                             79**************************************************************99887775544433322111... PP

                     TCP  72 eceaesssssasnsssg....................kaaksaakskksqksaasalnlak.esrakarararertrekmrikn 134
                                +es++                             ++  s++k+k+s+k ++ + n+ + esr+kararar+rtrekm++k 
  SapurV1A.0304s0080.1.p 185 ---SESEV--------VsgikltldrngdrrvmeaksDSLVSKPKEKRSKKVHKPVFNPVDrESREKARARARDRTREKMKNKG 257
                             ...11222........1233344445555666777665555555555555555545666666*******************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.5E-46101255IPR005333Transcription factor, TCP
PROSITE profilePS5136937.88103161IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.188235252IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MIASTYADPE NPSSIEYYSP TSFLQNFPDL FLDDDDLQVG ELISQQQQQP EVFGSNTHFL  60
AVETPEINPE ASNEESKRKI NNSKKRGNVN TSKQPIRQRR TGKKDRHSKI NTAQGPRDRR  120
MRLSLQIARK FFDLQDMLGF DKASKTIEWL FTKSKAAIKE LTDTVPKVRK WSRTSAGGKS  180
VSSTSESEVV SGIKLTLDRN GDRRVMEAKS DSLVSKPKEK RSKKVHKPVF NPVDRESREK  240
ARARARDRTR EKMKNKGIDK LSQSSQANPD SLEKFGYSSS SLEYGENFAS GRQEINSVKV  300
VDEGEESNNH HHLLPHQMDH DSIIDKFFGI TNSPRSSSIF DFSESVDVPT LKDEFSGFPL  360
KWDVTNGRVQ YKYNALPNMK LPSGNVQAQN PNANFMTTPH ALEQNSNAMI MATLNAHVEE  420
SPISTFMNMS NPNEQNPSSI LKTIDSGNQF SSSRIFARDY DRLY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0304s0080.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU1291910.0GU129191.1 Populus nigra TCP transcription factor (TB2) gene, partial cds.
GenBankGU1291920.0GU129192.1 Populus balsamifera TCP transcription factor (TB2) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011008633.10.0PREDICTED: transcription factor TCP12-like
TrEMBLA0A2K1YTC70.0A0A2K1YTC7_POPTR; Uncharacterized protein
STRINGPOPTR_0010s14030.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.13e-32TCP domain protein 12