PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0301s0010.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family TCP
Protein Properties Length: 406aa    MW: 46216.8 Da    PI: 7.9637
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0301s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1258e-391292863135
                     TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssasece 74 
                              kkdrhski T++g+RdRR+Rls+++a+ fFdLqd+L fdk+skt+eWLl+qa ++ik++ g                s+ss sece
  SapurV1A.0301s0010.1.p 129 SKKDRHSKINTAQGPRDRRMRLSLKVARDFFDLQDKLRFDKASKTVEWLLTQARTEIKKISGGfpvmnyscsttvgakSASSTSECE 215
                             69*************************************************************999999999988776555556673 PP

                     TCP  75 aesssssasnsssg................kaaksaakskksqksaasalnlakesrakarararertrekmriknk 135
                               s+  + +    +                k+++ +   ++s+k  a  + +ake+r+kar+rarert++k r +++
  SapurV1A.0301s0010.1.p 216 VLSEMINID----StlkvsrvskgksslcvKKERRTSRASSSRK--APLNPFAKETREKARERARERTKQKLRSRSR 286
                             333333333....0222344455566665544444433333333..44489999*****************998865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.5E-41129282IPR005333Transcription factor, TCP
PROSITE profilePS5136932.383130188IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.623263280IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MFPLSSNGYD PISYNDHQAY NMPFFSDIIS NSKQYVPPPI SFCHLPSPFF AYDQPELEDH  60
SILLQQSYDL LLHQQPLRAT ATSCTAPSQS TVGNNMVDSS KNDVIDEITE ICNKQSHSST  120
EQVPRKRSSK KDRHSKINTA QGPRDRRMRL SLKVARDFFD LQDKLRFDKA SKTVEWLLTQ  180
ARTEIKKISG GFPVMNYSCS TTVGAKSASS TSECEVLSEM INIDSTLKVS RVSKGKSSLC  240
VKKERRTSRA SSSRKAPLNP FAKETREKAR ERARERTKQK LRSRSRRLDE SKPCELEAVN  300
QEFNQFAGCW SPFETGDQES GTHNINPSLE VQLVEAEVPF YQEKEQLDTR EGMIDETLVS  360
IGKWSPSFPN HLHKNGIPQE NQFTDFQYPL YKTWDHEAYN IDGMC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0301s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002322035.20.0transcription factor TCP12
RefseqXP_024442245.10.0transcription factor TCP12
TrEMBLB9IDZ90.0B9IDZ9_POPTR; Uncharacterized protein
STRINGPOPTR_0015s03140.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65642851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.13e-21TCP domain protein 12