PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0292s0010.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 156aa    MW: 17733.4 Da    PI: 5.0132
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0292s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.78.2e-202676255
                     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                            +y+GVr+++ +g+++AeIrdps +g   r +lg+f+taeeAa+a+++a+ +++ 
  SapurV1A.0292s0010.1.p 26 RYRGVRRRP-WGKFAAEIRDPSRQG--GRLWLGTFDTAEEAARAYDKAAFNMRR 76
                            6********.**********96543..9***********************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.3E-312684IPR001471AP2/ERF domain
CDDcd000183.10E-282684No hitNo description
SMARTSM003802.2E-332690IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-222685IPR016177DNA-binding domain
PROSITE profilePS5103223.9862684IPR001471AP2/ERF domain
PfamPF008476.7E-142675IPR001471AP2/ERF domain
PRINTSPR003672.1E-112738IPR001471AP2/ERF domain
PRINTSPR003672.1E-115066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MEEPDKGKEN DEKGKENDEK GRGEVRYRGV RRRPWGKFAA EIRDPSRQGG RLWLGTFDTA  60
EEAARAYDKA AFNMRRQLAN LNFPGDFISQ VMGYSPRPQS FPPSSSNDGA TESFERGSSS  120
GTGQGKQVFE FEYLDDKILE ELLETEEEKK KRRQD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-30181382114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148152KKKRR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0292s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006379894.13e-75ethylene-responsive transcription factor ERF098
SwissprotQ9LTC56e-45ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLU5G5Z86e-74U5G5Z8_POPTR; Uncharacterized protein
STRINGPOPTR_0008s16600.11e-74(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.12e-18ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]