PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0283s0190.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 155aa    MW: 17201.4 Da    PI: 9.1054
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0283s0190.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31.1e-191464256
                     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                            +ykGVr +k +g+WvAeIr p++   r r++lg++ +a+eAa+a++aa ++l+g+
  SapurV1A.0283s0190.2.p 14 RYKGVRMRK-WGKWVAEIRQPNS---RNRIWLGSYNSADEAARAYDAAVLCLRGP 64
                            69*****99.**********943...49************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-131463IPR001471AP2/ERF domain
SMARTSM003801.4E-341477IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-301472IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-221473IPR016177DNA-binding domain
PROSITE profilePS5103222.7081471IPR001471AP2/ERF domain
CDDcd000184.17E-271471No hitNo description
PRINTSPR003674.4E-91526IPR001471AP2/ERF domain
PRINTSPR003674.4E-93753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MVRERRERGD DNGRYKGVRM RKWGKWVAEI RQPNSRNRIW LGSYNSADEA ARAYDAAVLC  60
LRGPSATFNF PTNMPEIPAT TEVLSPTQIR EVASRHARRG SAVELAERIV RPGLCEVPSG  120
MTGEVYMGGG ENMAEFKDGI FSGAYYQTPG VWAD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-16971972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0283s0190.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559561e-149EF155956.1 Populus trichocarpa RAP2-like protein (RAP2L15) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011026594.13e-95PREDICTED: ethylene-responsive transcription factor ERF016-like
SwissprotQ9C5912e-33ERF16_ARATH; Ethylene-responsive transcription factor ERF016
TrEMBLA9PLA52e-90A9PLA5_POPTR; ERF family protein
STRINGPOPTR_0018s00700.13e-91(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.14e-28ERF family protein