PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0282s0220.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family TALE
Protein Properties Length: 302aa    MW: 33949.3 Da    PI: 6.7043
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0282s0220.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.59.2e-082502832154
                             HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                             k +yp+++++++L +++gL+ +q+ +WF N+R +
  SapurV1A.0282s0220.1.p 250 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 283
                             469*****************************87 PP

2ELK25.53.2e-09204225122
                     ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                             ELK +L++++++++ ++++E++
  SapurV1A.0282s0220.1.p 204 ELKIELKQGFKSRIEDVREEIL 225
                             9*******************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.0E-193579IPR005540KNOX1
PfamPF037901.3E-173778IPR005540KNOX1
SMARTSM012569.9E-2293148IPR005541KNOX2
PfamPF037917.3E-1696147IPR005541KNOX2
PROSITE profilePS512139.132204224IPR005539ELK domain
PROSITE profilePS5007111.71224287IPR001356Homeobox domain
SMARTSM003895.6E-11226291IPR001356Homeobox domain
SuperFamilySSF466893.64E-16226291IPR009057Homeodomain-like
CDDcd000867.97E-12227288No hitNo description
Gene3DG3DSA:1.10.10.603.6E-25231289IPR009057Homeodomain-like
PfamPF059201.0E-17244283IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MQEPNLGMMG NGSGGALGGL SCGDMSVSLS GDQSRQLKAE IATHPLYEQL LSAHVSCLRV  60
ATPIDQLPLI DAQLSQSHHL LRSYASQHNQ HGHSLSPHER QDLDNFLAQY LIILCTFKDQ  120
LQQHVRVHAV EAVMACREIE TTLQALTGVT LGEGTGATMS DDEDDLQMDF SLDQSSADGH  180
DMMGFGPLLP TESERSLMER VRQELKIELK QGFKSRIEDV REEILRKRRA GKLPGDTTSV  240
LKNWWQQHSK WPYPTEDDKA KLVEETGLQL KQINNWFINQ RKRNWHSNSQ SVTSLKSKRK  300
R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A1e-12227283864Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1280300RKRNWHSNSQSVTSLKSKRKR
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0282s0220.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1442920.0EF144292.1 Populus trichocarpa clone PX0015_H02 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002299569.20.0homeobox protein HD1
SwissprotQ9FPQ81e-170KNAT7_ARATH; Homeobox protein knotted-1-like 7
TrEMBLA0A0E3VMX70.0A0A0E3VMX7_POPNI; Homeodomain transcription factor of the Knotted family
TrEMBLA9P8480.0A9P848_POPTR; Uncharacterized protein
STRINGcassava4.1_024801m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63483450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-169KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. He JB, et al.
    KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis.
    J Integr Plant Biol, 2018. 60(6): p. 514-528
    [PMID:29393579]