PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0282s0080.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 245aa    MW: 27460.7 Da    PI: 6.5087
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0282s0080.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.22.3e-1467116255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              ++G r +   ++Wv+e r+ps+   + r++lg++ t+e+Aa+a++ a+++l+g
  SapurV1A.0282s0080.1.p  67 VFRGTRKRN-GNKWVCEMREPSK---KSRIWLGTYPTPEMAARAHDVAALALRG 116
                             678888666.89********864...6*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.0E-2567130IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-1967126IPR016177DNA-binding domain
PfamPF008476.8E-1067116IPR001471AP2/ERF domain
PROSITE profilePS5103220.79867124IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.8E-2867126IPR001471AP2/ERF domain
CDDcd000183.95E-2668126No hitNo description
PRINTSPR003672.2E-66879IPR001471AP2/ERF domain
PRINTSPR003672.2E-690106IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MDGFCQFSDQ QHRLRSNSLP FDGRETSFSD SSSSRGFVHS DEEVLLAVSC PKKRAGRRIF  60
RETRHPVFRG TRKRNGNKWV CEMREPSKKS RIWLGTYPTP EMAARAHDVA ALALRGKSAC  120
LNFADSAWRL PVPVSKDAKD ITRAANEAAE LFRPQEFGGH PAKKQNSNAV VEDCSAEICS  180
DDCQTFQEND VFFEEAVFDM PGLLVDMAEG LLLSPPRYAR NDSTDWDHMG NGSDLSLWSY  240
QANF*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0282s0080.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6574360.0KM657436.1 Populus deltoides C-repeat/dehydration-responsive element-binding factor 2 (CBF2) mRNA, complete cds.
GenBankKM6574660.0KM657466.1 Populus simonii genotype 27 C-repeat/dehydration-responsive element-binding factor 2 (CBF2) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011014145.11e-147PREDICTED: dehydration-responsive element-binding protein 1E-like
RefseqXP_011029176.11e-147PREDICTED: dehydration-responsive element-binding protein 1E-like
SwissprotQ9FJ933e-61DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A0N6ZD591e-146A0A0N6ZD59_9ROSI; C-repeat/dehydration-responsive element-binding factor 2
STRINGPOPTR_0001s08710.11e-121(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.13e-52C-repeat-binding factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]