PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0281s0190.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family LBD
Protein Properties Length: 219aa    MW: 24197.2 Da    PI: 4.5042
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0281s0190.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.94.1e-3971071100
                  DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                             +C aCk+lrrkC+++Cv+apyf+ +q +++fa+vhk+FGasnv+kll +lp ++r da+ ++ yeA ar+rdP+yG+v+ i++lqqq
  SapurV1A.0281s0190.1.p   7 SCGACKFLRRKCTTECVFAPYFCYDQaAAHFAAVHKVFGASNVSKLLLHLPVHNRGDAAITISYEALARMRDPIYGCVAQIFALQQQ 93 
                             6************************978*********************************************************** PP

                  DUF260  87 leqlkaelallkee 100
                             +++l++e+++l+++
  SapurV1A.0281s0190.1.p  94 VASLQEEIEVLESQ 107
                             ********999877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.2536108IPR004883Lateral organ boundaries, LOB
PfamPF031956.1E-377105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MTGLGSSCGA CKFLRRKCTT ECVFAPYFCY DQAAAHFAAV HKVFGASNVS KLLLHLPVHN  60
RGDAAITISY EALARMRDPI YGCVAQIFAL QQQVASLQEE IEVLESQMAS LTVGVAGFES  120
SQTISNPDCE MLFSFQQDAM DTQYYQNPES AQPNHSGYTA GNQTFDGQMN APLPPLYGWE  180
DQNIFCNSHP RPLERLLEEV DKEIFTYCSW PDSGNIII*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-3531177120LOB family transfactor Ramosa2.1
5ly0_B2e-3531177120LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0281s0190.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:17259263}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002316271.21e-155LOB domain-containing protein 29
SwissprotQ9LHS86e-57LBD33_ARATH; LOB domain-containing protein 33
TrEMBLB9HT791e-153B9HT79_POPTR; Uncharacterized protein
STRINGPOPTR_0010s20800.11e-154(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91963242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.19e-48LOB domain-containing protein 33
Publications ? help Back to Top
  1. Bargmann BO,Birnbaum KD,Brenner ED
    An undergraduate study of two transcription factors that promote lateral root formation.
    Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45
    [PMID:24615800]