PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0277s0170.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family TCP
Protein Properties Length: 413aa    MW: 43756.4 Da    PI: 7.9109
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0277s0170.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP128.28.6e-4090199389
                     TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg 88 
                             + k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai++ tgt++++a+++  ++s +ss+++ ss+
  SapurV1A.0277s0170.1.p  90 TTKRPSKDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIASTGTGTIPANFStLNVSLRSSGATISSK 176
                             6899****************************************************************9998777777777744444 PP

                     TCP  89 ......................k 89 
                                                   +
  SapurV1A.0277s0170.1.p 177 saplsfhsglafydannasdarR 199
                             44555555555544433333330 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.7E-3795213IPR005333Transcription factor, TCP
PROSITE profilePS5136928.03195149IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MELMESQRNS ANQHGNSGGG KDHRHGQKQE SVAASLQLVP LESRSSQLQQ QHGSTATTPT  60
SQGPAMGSIP SQIGIHPSTS TSNSALTKST TKRPSKDRHT KVDGRGRRIR MPAMCAARVF  120
QLTRELGHKS DGETIEWLLQ QAEPAIIAST GTGTIPANFS TLNVSLRSSG ATISSKSAPL  180
SFHSGLAFYD ANNASDARRA MASNPPMLGF HHQLYPQNLV SDDNYMRKIF REDLFKETTQ  240
QQGTETIEAS NSAKSRAGVQ DQETAGSIRP TTNLLTTPMW AVAPAATTNG GNTFWMLPVG  300
GGATPTASVQ EPQMWTFPAA AAGVPSMQRV NFGGGGRVSS PVQLGSMIVQ QQLGANQQLG  360
LGISESNMGM TLGGLNPYSS SRVGLGMDLE QHNQDNQPQG SDSGDENPND SQ*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00228DAPTransfer from AT1G72010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0277s0170.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2156260.0AC215626.1 Populus trichocarpa clone POP014-A12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024439730.10.0transcription factor TCP23
SwissprotQ9C7G43e-79TCP22_ARATH; Transcription factor TCP22
TrEMBLA0A2I4KK620.0A0A2I4KK62_POPTR; TCP family protein
STRINGPOPTR_0013s11510.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60773050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72010.11e-75TCP family protein
Publications ? help Back to Top
  1. Wu JF, et al.
    LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.
    Nat Commun, 2016. 7: p. 13181
    [PMID:27734958]
  2. Dong H, et al.
    Ubiquitylation activates a peptidase that promotes cleavage and destabilization of its activating E3 ligases and diverse growth regulatory proteins to limit cell proliferation in Arabidopsis.
    Genes Dev., 2017. 31(2): p. 197-208
    [PMID:28167503]