PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0264s0250.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 258aa    MW: 28734.1 Da    PI: 6.9044
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0264s0250.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.26.6e-2194143255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              y+G+r+++ +g+W+AeIrdp     +  r++lg++ taeeAaka+++a+k+++g
  SapurV1A.0264s0250.2.p  94 VYRGIRQRP-WGKWAAEIRDPH----KgVRVWLGTYNTAEEAAKAYDEAAKRIRG 143
                             69*******.**********72....35************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.57E-2294152IPR016177DNA-binding domain
PfamPF008471.1E-1494143IPR001471AP2/ERF domain
SMARTSM003801.5E-3794157IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-3294152IPR001471AP2/ERF domain
PROSITE profilePS5103223.77594151IPR001471AP2/ERF domain
PRINTSPR003672.2E-1195106IPR001471AP2/ERF domain
CDDcd000185.40E-3395153No hitNo description
PRINTSPR003672.2E-11117133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008219Biological Processcell death
GO:0009723Biological Processresponse to ethylene
GO:0009735Biological Processresponse to cytokinin
GO:0009753Biological Processresponse to jasmonic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051707Biological Processresponse to other organism
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MCGGAIISDI VAVKRGRIST TDDLWLELDT ISDFFGFDHG SINSINNGSK KENLSNLKLP  60
QKPSQLNQEK VEKPSQAAEQ EAGNKKAQRT RKNVYRGIRQ RPWGKWAAEI RDPHKGVRVW  120
LGTYNTAEEA AKAYDEAAKR IRGDKAKLNF PAQPPPYSEA AAPPTKKRCI SGPETASVAS  180
CDTPPPRESY YGYQNEDYDL TEKILNLESF LGLEPKQMAD QLSCNGGGSG DCRCDPVDLW  240
MLDDLVTHHQ YQRELNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-2395151360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00109PBMTransfer from AT3G16770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0264s0250.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024465361.11e-127ethylene-responsive transcription factor RAP2-3 isoform X2
TrEMBLA0A2K1YM031e-122A0A2K1YM03_POPTR; Uncharacterized protein
STRINGPOPTR_0010s00900.11e-123(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.13e-46ethylene-responsive element binding protein