PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0248s0230.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 380aa    MW: 42385 Da    PI: 5.4001
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0248s0230.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.00039426123
                            EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                            +kC+ C ksFs+   L  H+r+H
  SapurV1A.0248s0230.1.p  4 HKCKLCFKSFSNGRALGGHMRSH 26
                            79********************9 PP

2zf-C2H213.60.0002243265123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             ykC+ C+k+F++   L  H  +H
  SapurV1A.0248s0230.1.p 243 YKCETCSKVFKSYQALGGHRASH 265
                             9************9999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.27E-5329No hitNo description
PfamPF139125.8E-6426IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.596431IPR007087Zinc finger, C2H2
SMARTSM003550.038426IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
PfamPF139125.7E-11243267IPR007087Zinc finger, C2H2
SuperFamilySSF576672.2E-8243265No hitNo description
SMARTSM003550.021243265IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.429243270IPR007087Zinc finger, C2H2
PROSITE patternPS000280245265IPR007087Zinc finger, C2H2
SuperFamilySSF576672.2E-8292319No hitNo description
PfamPF139122.1E-9297319IPR007087Zinc finger, C2H2
SMARTSM003550.2297319IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.099297319IPR007087Zinc finger, C2H2
PROSITE patternPS000280299319IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MEKHKCKLCF KSFSNGRALG GHMRSHLLNL PVPPKLEDQF PHIEVSEDTE SISSSEEEAE  60
EVQGEEEEEE EEEKGAFYGL RENPKRSIRL VDPEFCFAAA DAGSVVLQDR ESETESSKNP  120
TGRRSKRTKR LLENLHHLYH QQRSRQEQGN CNIVKKLEFQ KMGTVKAADE SSSGHEPEPV  180
SSISDTTTEE DVAFCLMMLS RDRWKRKEQE NQEEEQELEG EVEAGTDDSG ELKSCKTKVR  240
GKYKCETCSK VFKSYQALGG HRASHKKLKV YTPSKEPNLE PTENAGASTS LPGKKIHECP  300
FCFRVFSSGQ ALGGHKRSHV IGVAASSSTP VRSSTEFGDK NLGMIDLNLP APVDDDDDIN  360
QADKLSAVSD AEFVNYIKR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0248s0230.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024440190.10.0zinc finger protein ZAT9 isoform X2
TrEMBLA0A2I4KKY00.0A0A2I4KKY0_POPTR; C2H2 family protein
STRINGPOPTR_0014s06150.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-63C2H2-like zinc finger protein