PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0237s0310.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 312aa    MW: 34566 Da    PI: 9.5024
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0237s0310.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.8e-18106156256
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                              y+GVr+++ +g+WvAeIr p +   r r++lg+++tae Aa a+++a+ kl+ e
  SapurV1A.0237s0310.1.p 106 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYDTAEAAAYAYDRAAYKLRSE 156
                             59******9.**********954...5*************************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.16E-15105165No hitNo description
SuperFamilySSF541716.02E-22106163IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.3E-30106164IPR001471AP2/ERF domain
SMARTSM003801.4E-33106169IPR001471AP2/ERF domain
PROSITE profilePS5103222.853106163IPR001471AP2/ERF domain
PRINTSPR003673.9E-10107118IPR001471AP2/ERF domain
PfamPF008479.5E-13107155IPR001471AP2/ERF domain
PRINTSPR003673.9E-10129145IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MERVQENNLS FAFNRAGIGS SLSQLIMTGG TSTLDSIFSH CQPARTLNSP VLEPLGSSVY  60
LRQRDLLQKF SEENRINTPF SHNLLTNPLQ NPVHTSNYLA PTKKKLYRGV RQRHWGKWVA  120
EIRLPQNRMR VWLGTYDTAE AAAYAYDRAA YKLRSEYARL NFPNLKDPTR LGFTDCGRLD  180
ALNNTVDAKI QAICQKVKRE RAKKNAAKKS DANGNCTRSK KPVKVDSNAS KSSPSSSSSV  240
SPLFSGDNWG GSELVSPAVS EDGFRKCESS SSPSVSTDCA LMVPQAMEFE DCSLARMPSY  300
DPELIWEVLA N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-19103163263ATERF1
3gcc_A5e-19103163263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0237s0310.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002304554.11e-174ethylene-responsive transcription factor ERF061
SwissprotQ9C7W23e-64ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLB9GXH61e-172B9GXH6_POPTR; Uncharacterized protein
STRINGPOPTR_0003s13910.11e-173(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71813148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.11e-52ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]