PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0237s0040.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 348aa    MW: 38351.3 Da    PI: 4.9602
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0237s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.7e-19127178156
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                             ++++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ +l+g+
  SapurV1A.0237s0040.1.p 127 KKFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYDTAEEAAMVYDNAAIQLRGA 178
                             59********.**********72....45*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.14E-31127184No hitNo description
PfamPF008472.5E-12128177IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-29128185IPR001471AP2/ERF domain
SuperFamilySSF541713.92E-21128185IPR016177DNA-binding domain
PROSITE profilePS5103223.235128185IPR001471AP2/ERF domain
SMARTSM003803.5E-35128191IPR001471AP2/ERF domain
PRINTSPR003673.8E-10129140IPR001471AP2/ERF domain
PRINTSPR003673.8E-10151167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048364Biological Processroot development
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MKMDRPVKFT EHRNQTKLTT PFLSNPVQYS KPPKIVRISV TDTYATDSSS DEENEDSRIS  60
SRKQHVTRVK KFVSEISIEP TAPPSTTAGC VAGDTGSRTR PSRSARKKAG INVSQGRRLP  120
ATAVAGKKFR GVRQRPWGKW AAEIRDPLRR VRLWLGTYDT AEEAAMVYDN AAIQLRGADA  180
LTNFVTPPAR CSPVAATSGY MSGDESNSNR NINIDNADNV GVSSPISVLR FSEEAESQSV  240
GSSREIQETG NEVREVKEDS CVSENFSEHN SSIDSLYPLT TDIYEFPSSG RGIFEETSFA  300
DGGFLKDDDF RDMDLDFEFG FGLSSWNVQD HFQDIGDLFG SDSLITI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-20126184362ATERF1
3gcc_A4e-20126184362ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00027PBMTransfer from AT4G23750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0237s0040.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002303625.20.0ethylene-responsive transcription factor CRF1
TrEMBLA0A2K2B6M70.0A0A2K2B6M7_POPTR; Uncharacterized protein
STRINGPOPTR_0003s13610.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.22e-59cytokinin response factor 2