PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0232s0150.3.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family TCP
Protein Properties Length: 484aa    MW: 52426.4 Da    PI: 8.2778
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0232s0150.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP121.31.2e-37892422132
                     TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...................ssss 69 
                              g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++++ ai el+++                   +   
  SapurV1A.0232s0150.3.p  89 SGGKDRHSKVWTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKASQDAINELPSLnhcfpdtpkqlsdekkssdG--- 172
                             689*************************************************************88765544444333222221... PP

                     TCP  70 aseceaesssssasnsssg.....................kaaksaakskksqksaasalnlak....esrakarararertrekmr 131
                                               +                      + +++a+s+ s++s+ s l+l++     sr+kar+rarert++++ 
  SapurV1A.0232s0150.3.p 173 ------------------TeqgfdsadveledtnfrqnqnLSLSKSACSSTSETSKGSGLSLSRsdirYSREKARERARERTAKEKE 241
                             ..................01122233344444444444545555556666667777767777764344677*********9988766 PP

                     TCP 132 i 132
                             +
  SapurV1A.0232s0150.3.p 242 K 242
                             5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.6E-4490242IPR005333Transcription factor, TCP
PROSITE profilePS5136932.01991149IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.278222240IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MEAEEIQRQP RKFSRVGGNG IRDSSRIAQK GNGTDHQYPD DEEDGVLKRT SSSNGACGGI  60
NATGVDGGTF TGLRAWHHSS RIIRVSRASG GKDRHSKVWT SKGLRDRRVR LSVTTAIQFY  120
DLQDRLGYDQ PSKAVEWLIK ASQDAINELP SLNHCFPDTP KQLSDEKKSS DGTEQGFDSA  180
DVELEDTNFR QNQNLSLSKS ACSSTSETSK GSGLSLSRSD IRYSREKARE RARERTAKEK  240
EKEYDSRMAH HSNINPISQS STFTELLTGG IGGASNNSNN NSTGSPTGSH EANNLFQKAA  300
AARQWPSIPM DYFGSGLLGA SSSRSTHHSS GFPGQIQLGN SIPQAMTMSI PPFCLSGESH  360
QEHLQHFPFV SDHLIPVAAT AQPPASSVDY NLNFTISSGL AAGFNRGTLQ SNSSSPSLLP  420
HLQRLSTSST IDGSTTNLPF FIGAATPQAM ESHHHHHHQF PPGLQLCYGD GTRHSDHKGK  480
GKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-2496150155Putative transcription factor PCF6
5zkt_B2e-2496150155Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0232s0150.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011014905.10.0PREDICTED: transcription factor TCP2-like
RefseqXP_011014906.10.0PREDICTED: transcription factor TCP2-like
RefseqXP_011014907.10.0PREDICTED: transcription factor TCP2-like
TrEMBLA0A2K1YHA50.0A0A2K1YHA5_POPTR; Uncharacterized protein
STRINGPOPTR_0011s02350.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.21e-41TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2