PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0219s0320.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 274aa    MW: 30262.9 Da    PI: 7.3656
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0219s0320.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43e-1761112156
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                             + y+GVr++   ++Wv+e+r+p   +k+ r+++g+f ++e+Aa+a++ a+++l+ge
  SapurV1A.0219s0320.1.p  61 PVYRGVRRRN-GNKWVCEVREP---NKKSRIWVGTFKSPEMAARAHDVAALALKGE 112
                             68*****887.9******9998...347*************************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.6E-1361112IPR001471AP2/ERF domain
SMARTSM003806.4E-2362125IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-1962120IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.5E-2762120IPR001471AP2/ERF domain
PROSITE profilePS5103220.11262119IPR001471AP2/ERF domain
PRINTSPR003679.1E-76374IPR001471AP2/ERF domain
CDDcd000183.25E-2563121No hitNo description
PRINTSPR003679.1E-785101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MEFENYSSSS SSQSSIRQTL SCKPCNNPDI YNLTLGQERQ NAVLIKKNRA GRTKFKETRH  60
PVYRGVRRRN GNKWVCEVRE PNKKSRIWVG TFKSPEMAAR AHDVAALALK GEFATLNFLD  120
SPSILPRAKS SSARDIQRAA RAATEVSGQS ASSCSSSSSA DHKKLSWETR STKVLSSSLS  180
DLPHEKGTEI ANEELFSNMA MSCSDNCSEK VPNYSHEKFF DEEALFNMPG LLDSMAEGLI  240
LTPLAMASGA LNWDDMACST DLTLWEDDCL DSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-11601181271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0219s0320.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0136500.0KM013650.1 Populus deltoides isolate Lat46.45 CBF6 gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024464341.11e-147dehydration-responsive element-binding protein 3
TrEMBLA0A3N7GBZ41e-146A0A3N7GBZ4_POPTR; Uncharacterized protein
STRINGPOPTR_0009s14990.11e-118(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.14e-35C-repeat-binding factor 4